Merge branch 'release/v1.1.1'

Author: naubuan

CHANGELOG.md

@@ -1,6 +1,13 @@
 Change log
 ==========
 
+[1.1.1][] (2026-2-13)
+---------------------
+
+### Security
+
+* Updated Pillow to 12.1.1.
+
 [1.1.0][] (2026-1-23)
 ---------------------
 
@@ -21,5 +28,6 @@ Change log
 * Package.
 * Documentation.
 
+[1.1.1]: https://github.com/naubuan/bdendro/releases/tag/v1.1.1
 [1.1.0]: https://github.com/naubuan/bdendro/releases/tag/v1.1.0
 [1.0.0]: https://github.com/naubuan/bdendro/releases/tag/v1.0.0

docs/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 8356a02a9c2666d4ac7d1af052957972
+config: ff2c151d26ca6a6dccc413a92d480234
 tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/_images/coloring_a_subtree_consisting_of_a_single_node.png

@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '1.0.0',
+    VERSION: '1.1.1',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

docs/_static/documentation_options.js

@@ -6,12 +6,12 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>bdendro.dendrogram_renderer function &#8212; BDendro 1.0.0 documentation</title>
+    <title>bdendro.dendrogram_renderer function &#8212; BDendro 1.1.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=d75fae25" />
     <link rel="stylesheet" type="text/css" href="../_static/bizstyle.css?v=5283bb3d" />
     <link rel="stylesheet" type="text/css" href="../_static/custom.css?v=3d8ab858" />
 
-    <script src="../_static/documentation_options.js?v=a12e3537"></script>
+    <script src="../_static/documentation_options.js?v=d727d969"></script>
     <script src="../_static/doctools.js?v=fd6eb6e6"></script>
     <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="../_static/bizstyle.js"></script>
@@ -54,12 +54,12 @@ <h3>Navigation</h3>
 <h1>bdendro.dendrogram_renderer function<a class="headerlink" href="#bdendro-dendrogram-renderer-function" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="bdendro.dendrogram_renderer">
-<span class="sig-prename descclassname"><span class="pre">bdendro.</span></span><span class="sig-name descname"><span class="pre">dendrogram_renderer</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">Z</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vertical</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/naubuan/bdendro/blob/v1.0.0/src/bdendro/_renderers.py#L19-L104"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bdendro.dendrogram_renderer" title="Link to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">bdendro.</span></span><span class="sig-name descname"><span class="pre">dendrogram_renderer</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">Z</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">threshold</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vertical</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/naubuan/bdendro/blob/v1.1.1/src/bdendro/_renderers.py#L19-L104"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bdendro.dendrogram_renderer" title="Link to this definition">¶</a></dt>
 <dd><p>Make a renderer of a dendrogram.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><ul class="simple">
-<li><p><strong>Z</strong> (<em>(</em><em>N - 1</em><em>, </em><em>4</em><em>) </em><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><em>numpy.ndarray</em></a>) – Linkage matrix returned by <a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/reference/generated/scipy.cluster.hierarchy.linkage.html#scipy.cluster.hierarchy.linkage" title="(in SciPy v1.17.0)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">scipy.cluster.hierarchy.linkage</span></code></a> function.
+<li><p><strong>Z</strong> (<em>(</em><em>N - 1</em><em>, </em><em>4</em><em>) </em><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v2.4)"><em>numpy.ndarray</em></a>) – Linkage matrix returned by <a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.cluster.hierarchy.linkage.html#scipy.cluster.hierarchy.linkage" title="(in SciPy v1.17.0)"><code class="xref py py-obj docutils literal notranslate"><span class="pre">scipy.cluster.hierarchy.linkage</span></code></a> function.
 <code class="docutils literal notranslate"><span class="pre">N</span></code> is the number of leaves.</p></li>
 <li><p><strong>threshold</strong> (<a class="reference external" href="https://docs.python.org/3/library/functions.html#float" title="(in Python v3.14)"><em>float</em></a><em> or </em><em>None</em><em>, </em><em>optional</em>) – Height for cutting a dendrogram in subtrees. If <code class="docutils literal notranslate"><span class="pre">None</span></code>, a dendrogram
 is not cut.</p></li>

docs/api/bdendro.dendrogram_renderer.html

@@ -6,12 +6,12 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>bdendro package &#8212; BDendro 1.0.0 documentation</title>
+    <title>bdendro package &#8212; BDendro 1.1.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=d75fae25" />
     <link rel="stylesheet" type="text/css" href="../_static/bizstyle.css?v=5283bb3d" />
     <link rel="stylesheet" type="text/css" href="../_static/custom.css?v=3d8ab858" />
 
-    <script src="../_static/documentation_options.js?v=a12e3537"></script>
+    <script src="../_static/documentation_options.js?v=d727d969"></script>
     <script src="../_static/doctools.js?v=fd6eb6e6"></script>
     <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="../_static/bizstyle.js"></script>

docs/api/bdendro.html

@@ -6,12 +6,12 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>bdendro.set_axes function &#8212; BDendro 1.0.0 documentation</title>
+    <title>bdendro.set_axes function &#8212; BDendro 1.1.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=d75fae25" />
     <link rel="stylesheet" type="text/css" href="../_static/bizstyle.css?v=5283bb3d" />
     <link rel="stylesheet" type="text/css" href="../_static/custom.css?v=3d8ab858" />
 
-    <script src="../_static/documentation_options.js?v=a12e3537"></script>
+    <script src="../_static/documentation_options.js?v=d727d969"></script>
     <script src="../_static/doctools.js?v=fd6eb6e6"></script>
     <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="../_static/bizstyle.js"></script>
@@ -54,7 +54,7 @@ <h3>Navigation</h3>
 <h1>bdendro.set_axes function<a class="headerlink" href="#bdendro-set-axes-function" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="bdendro.set_axes">
-<span class="sig-prename descclassname"><span class="pre">bdendro.</span></span><span class="sig-name descname"><span class="pre">set_axes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">figure</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dendrogram</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vertical</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/naubuan/bdendro/blob/v1.0.0/src/bdendro/_axes.py#L17-L93"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bdendro.set_axes" title="Link to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">bdendro.</span></span><span class="sig-name descname"><span class="pre">set_axes</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">figure</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dendrogram</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">labels</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">vertical</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/naubuan/bdendro/blob/v1.1.1/src/bdendro/_axes.py#L17-L93"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bdendro.set_axes" title="Link to this definition">¶</a></dt>
 <dd><p>Set x and y axes to be appropriate for a dendrogram.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>

docs/api/bdendro.set_axes.html

@@ -6,12 +6,12 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>bdendro.subtree_cmap function &#8212; BDendro 1.0.0 documentation</title>
+    <title>bdendro.subtree_cmap function &#8212; BDendro 1.1.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=d75fae25" />
     <link rel="stylesheet" type="text/css" href="../_static/bizstyle.css?v=5283bb3d" />
     <link rel="stylesheet" type="text/css" href="../_static/custom.css?v=3d8ab858" />
 
-    <script src="../_static/documentation_options.js?v=a12e3537"></script>
+    <script src="../_static/documentation_options.js?v=d727d969"></script>
     <script src="../_static/doctools.js?v=fd6eb6e6"></script>
     <script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="../_static/bizstyle.js"></script>
@@ -50,7 +50,7 @@ <h3>Navigation</h3>
 <h1>bdendro.subtree_cmap function<a class="headerlink" href="#bdendro-subtree-cmap-function" title="Link to this heading">¶</a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="bdendro.subtree_cmap">
-<span class="sig-prename descclassname"><span class="pre">bdendro.</span></span><span class="sig-name descname"><span class="pre">subtree_cmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dendrogram</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">palette</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">skip_single</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/naubuan/bdendro/blob/v1.0.0/src/bdendro/_transform.py#L19-L61"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bdendro.subtree_cmap" title="Link to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">bdendro.</span></span><span class="sig-name descname"><span class="pre">subtree_cmap</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dendrogram</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">palette</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default_color</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">skip_single</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/naubuan/bdendro/blob/v1.1.1/src/bdendro/_transform.py#L19-L61"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#bdendro.subtree_cmap" title="Link to this definition">¶</a></dt>
 <dd><p>Make a mapping from a subtree label to a color.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>

docs/api/bdendro.subtree_cmap.html

@@ -6,12 +6,12 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Basic usage &#8212; BDendro 1.0.0 documentation</title>
+    <title>Basic usage &#8212; BDendro 1.1.1 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=d75fae25" />
     <link rel="stylesheet" type="text/css" href="../../_static/bizstyle.css?v=5283bb3d" />
     <link rel="stylesheet" type="text/css" href="../../_static/custom.css?v=3d8ab858" />
 
-    <script src="../../_static/documentation_options.js?v=a12e3537"></script>
+    <script src="../../_static/documentation_options.js?v=d727d969"></script>
     <script src="../../_static/doctools.js?v=fd6eb6e6"></script>
     <script src="../../_static/sphinx_highlight.js?v=6ffebe34"></script>
     <script src="../../_static/bizstyle.js"></script>
@@ -52,7 +52,7 @@ <h3>Navigation</h3>
 
   <section id="basic-usage">
 <h1>Basic usage<a class="headerlink" href="#basic-usage" title="Link to this heading">¶</a></h1>
-<div style="height:300px;"><script src="bokeh-content-c7c91efea56248a69136b6684ffab80e-examples-generated-basic_usage.js" id="b8695179-4b59-457b-ac83-942d262dcde0"></script></div><div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">bokeh.io</span>
+<div style="height:300px;"><script src="bokeh-content-9f9e20e780424c9fa4093c1a5069871c-examples-generated-basic_usage.js" id="fe986b27-9001-4d64-ab19-e1168acf8f71"></script></div><div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span><span class="w"> </span><span class="nn">bokeh.io</span>
 <span class="kn">import</span><span class="w"> </span><span class="nn">bokeh.plotting</span>
 <span class="kn">import</span><span class="w"> </span><span class="nn">scipy</span>