--cellranger_index expects a file and not a directory, despite what the documentation says

[dtatarak]

Description of the bug

It seems when I specify:

--cellranger_index path/to/cellranger/index

I get an error:

* --cellranger_index: '/share/reference/Homo_sapiens/10x/refdata-gex-GRCh38-2024-A' is not a file, but a directory (/share/reference/Homo_sapiens/10x/refdata-gex-GRCh38-2024-A)

However, I believe the appropriate behavior is to pass a directory containing the full reference that cellranger generates.

"with --cellranger_index. Besure to provide the base path of the index (e.g., --cellranger_index /PATH/TO/10X_REF/refdata-gex-GRCh38-2024-A/)"

Command used and terminal output

Relevant files

No response

System information

No response