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@aphp Greater Paris University Hospitals (AP-HP)

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    57 repositories

    • edsnlp

      Public
      Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
      nlpfasttext-mining
      nlpfasttext-miningdeep-learningpytorchspacymedicalfrenchmulti-taskrule-based
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •44•164•29•15•Updated Aug 26, 2026Aug 26, 2026

    • IG-FHIR-EDSH-SOCLE-COMMUN

      Public
      Données socles des Entrepôts de Données de Santé Hospitalier
      GLSL
      •
      Other
      •1•1•0•1•Updated Aug 26, 2026Aug 26, 2026

    • fhir-mapbuilder

      Public
      FHIR MapBuilder is a Visual Studio Code extension designed to facilitate the edition of FHIR StructureMap resources using FHIR Mapping Language (FML).
      fhirfml
      fhirfml
      TypeScript
      •
      Other
      •3•5•4•1•Updated Aug 24, 2026Aug 24, 2026

    • jupyter-eds-notebooks

      Public
      jupyter-eds-notebooks provides Docker images with preconfigured Jupyter environments for clinical and health data analysis, tailored for AP‑HP Datalabs and the …
      data-sciencelabdata-visualization
      data-sciencelabdata-visualizationhealthcaredata-analysis
      Shell
      •
      Apache License 2.0
      •1•2•3•1•Updated Aug 24, 2026Aug 24, 2026

    • Cohort360-FrontEnd

      Public
      A web application to find patients, build cohorts and visualize health records
      querydata-visualizationmedical
      querydata-visualizationmedicalfhirvisualize-datamedtechclinical-datacohortsomopcohort-analysis
      TypeScript
      •
      Apache License 2.0
      •10•55•0•2•Updated Aug 21, 2026Aug 21, 2026

    • Cohort360-Back-end

      Public
      Part of the Cohort360 Project @ https://github.com/aphp/Cohort360, backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Adminis…
      apiadministrationportal
      apiadministrationportalcohort
      Python
      •
      Apache License 2.0
      •1•7•0•2•Updated Aug 17, 2026Aug 17, 2026

    • datahub-sample

      Public
      Exemple de metadata-as-code DataHub pour un Entrepôt de Données de Santé (EDS) virtuel : data products, glossaire métier, domaines et conformité HealthDCAT-AP/E…
      metadatadata-catalogdatahub
      metadatadata-catalogdatahubaphphealthdcat-ap
      Apache License 2.0
      •0•0•0•0•Updated Aug 17, 2026Aug 17, 2026

    • confit

      Public
      Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Python type annotations, mi…
      pythoncliregistry
      pythoncliregistryvalidationinterpolationconfiguration
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•11•2•1•Updated Aug 11, 2026Aug 11, 2026

    • ig-template-aphp

      Public
      Custom FHIR IG Publisher template for AP-HP (aphp.fhir.template). Extends hl7.fhir.template with AP-HP branding, Jekyll/Liquid overrides, and CSS/JS customizati…
      HTML
      •1•0•1•0•Updated Aug 7, 2026Aug 7, 2026

    • IG-fhir-dm

      Public
      FHIR Implementation Guide for Data Management
      data-managementhl7-fhir
      data-managementhl7-fhir
      Python
      •
      Other
      •2•7•1•2•Updated Aug 5, 2026Aug 5, 2026

    • Cohort360-QueryExecutor

      Public
      Scala
      •
      Mozilla Public License 2.0
      •0•2•0•5•Updated Aug 4, 2026Aug 4, 2026

    • Cohort360-AdministrationPortal

      Public
      TypeScript
      •0•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • ci-workflows

      Public
      This repository hosts GitHub Workflows examples to be used in APHP Projects
      Dockerfile
      •
      Apache License 2.0
      •2•0•1•0•Updated Jul 28, 2026Jul 28, 2026

    • trino

      Public
      Official repository of Trino, the distributed SQL query engine for big data, formerly known as PrestoSQL (https://trino.io)
      Java
      •
      Apache License 2.0
      •3.7k•0•0•0•Updated Jul 27, 2026Jul 27, 2026

    • mkdocs-eds

      Public
      Various plugins and extensions to customize mkdocs
      CSS
      •
      Apache License 2.0
      •0•2•2•0•Updated Jul 20, 2026Jul 20, 2026

    • Exercice-Front-Habilitations

      Public
      Exercice technique Front
      TypeScript
      •8•0•0•0•Updated Jul 15, 2026Jul 15, 2026

    • fig-atelier-3

      Public
      Dépôt de l'atelier #3
      GLSL
      •
      Other
      •0•0•0•0•Updated Jul 7, 2026Jul 7, 2026

    • junior-data-exercise

      Public
      Exercice pour candidature sur un poste de data ingéieur junior
      12•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • Entretiens-Cohort360

      Public
      Shell
      •15•0•0•6•Updated Jun 30, 2026Jun 30, 2026

    • edspdf-poppler

      Public
      Poppler extension for EDS-PDF
      pythonpdfextractor
      pythonpdfextractorbindingsprebuiltpoppleredspdf
      Python
      •
      GNU General Public License v2.0
      •0•0•1•0•Updated Jun 24, 2026Jun 24, 2026

    • redcap-containers

      Public
      A set of container images used to run APHP REDCap Helmchart
      cloudcontainerhealth
      cloudcontainerhealthredcapecrf
      Dockerfile
      •
      Apache License 2.0
      •3•1•0•0•Updated Jun 4, 2026Jun 4, 2026

    • HELIX

      Public
      HELIX (Health and Exploration Lab for Innovative eXperiments) is an AP‑HP open‑source platform that bundles data lab and clinical research tools into a secure, …
      data-sciencehelmlab
      data-sciencehelmlabdata-visualizationdata-analysis
      Python
      •
      Apache License 2.0
      •0•6•1•0•Updated May 5, 2026May 5, 2026

    • ig-template-aphp-v2

      Public
      CSS
      •2•0•5•1•Updated Apr 17, 2026Apr 17, 2026

    • redcap-helmchart

      Public
      APHP REDCap cloud-native and vendor-agnostic HelmChart
      cloudhealthredcap
      cloudhealthredcaphelmchartecrfaphp
      Go Template
      •
      Apache License 2.0
      •6•6•1•1•Updated Apr 1, 2026Apr 1, 2026

    • fig-atelier-1

      Public
      Dépôts de l'atelier FHIR #1
      GLSL
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • foldedtensor

      Public
      PyTorch extension for handling deeply nested sequences of variable length
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•15•1•2•Updated Mar 19, 2026Mar 19, 2026

    • eds-pseudo

      Public
      EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
      nlppseudonymisationedsnlp
      nlppseudonymisationedsnlp
      Python
      •
      Other
      •9•73•3•0•Updated Feb 5, 2026Feb 5, 2026

    • hl7.fhir.fr.core

      Public
      FHIR FrCore Implementation Guide
      GLSL
      •
      Other
      •6•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • nf-s97

      Public
      normes homologuées par AFNOR : NF S97-53x Novembre 2010 Informatique de santé - Messages concernant la transfusion sanguine - Message de traçabilité de produits…
      Java
      •0•1•0•0•Updated Dec 10, 2025Dec 10, 2025

    • kerberos-kinit

      Public
      This is a simple docker image continuously refreshing a krb5 ticket cache. It is intended to be used in K8S as a side-car runing in a pod needing such authentic…
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 2, 2025Dec 2, 2025
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