Repositories list

• neoantigen-pipeline

  Public
  Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

  Nextflow

  •

  MIT License

  •11 fork•99 stars•1313 issues•11 pull request•Updated Aug 25, 2026Aug 25, 2026

• beagle

  Public
  Voyager Backend

  Python

  •

  Apache License 2.0

  •77 forks•22 stars•9999 issues•1414 pull requests•Updated Aug 24, 2026Aug 24, 2026

• smile-dashboard

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •1010 forks•00 stars•00 issues•33 pull requests•Updated Aug 21, 2026Aug 21, 2026

• smile-server

  Public
  Java

  •44 forks•22 stars•8686 issues•11 pull request•Updated Aug 20, 2026Aug 20, 2026

• acela-cli

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 17, 2026Aug 17, 2026

• neoantigen-utils

  Public
  Mutated (and alternate-transcript) peptide FASTA generation from a MAF for neoantigen prediction

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 13, 2026Aug 13, 2026

• igo-lims-plugins

  Public
  Sapio LIMS customizations to workflows for IGO

  Java

  •00 forks•22 stars•11 issue•1010 pull requests•Updated Aug 13, 2026Aug 13, 2026

• igo-run-qc-node

  Public
  JavaScript

  •00 forks•00 stars•00 issues•22 pull requests•Updated Aug 11, 2026Aug 11, 2026

• tempo

  Public
  CCS research pipeline to process WES and WGS TN pairs

  Groovy

  •00 forks•77 stars•5252 issues•1212 pull requests•Updated Aug 11, 2026Aug 11, 2026

• smile-commons

  Public
  Centralized configurations for checkstyle plugin and dependency management.

  Java

  •

  GNU Affero General Public License v3.0

  •44 forks•11 star•00 issues•00 pull requests•Updated Aug 11, 2026Aug 11, 2026

• toxicology

  Public
  R

  •00 forks•00 stars•22 issues•00 pull requests•Updated Aug 6, 2026Aug 6, 2026

• argos-operator-v2

  Public
  Template Operator for Voyager SDK

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2026Aug 5, 2026

• facets2n

  Public
  Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

  ngscopy-number-variationngs-analysis+ 1

  ngscopy-number-variationngs-analysisallele-specific

  R

  •

  GNU General Public License v3.0

  •00 forks•1414 stars•00 issues•00 pull requests•Updated Aug 4, 2026Aug 4, 2026

• ccs_cohort_utils

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• IrisAI

  Public
  AI-powered HPC research assistant with skill-based routing for Slurm clusters, bioinformatics workflows, and scientific computing.

  Python

  •

  Other

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jul 29, 2026Jul 29, 2026

• facets-suite-2n

  Public
  Facets suite for FACETS 2n.

  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 28, 2026Jul 28, 2026

• facets-preview

  Public
  Load, review and adjust facets fits

  R

  •33 forks•22 stars•1414 issues•00 pull requests•Updated Jul 24, 2026Jul 24, 2026

• facetsHeatmap

  Public
  Visualization of copy number profile distributions in a cohort

  R

  •00 forks•44 stars•00 issues•00 pull requests•Updated Jul 24, 2026Jul 24, 2026

• smile-databricks-gateway

  Public
  Go

  •

  GNU Affero General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 23, 2026Jul 23, 2026

• igo-genomics

  Public
  Vue

  •00 forks•11 star•33 issues•11 pull request•Updated Jul 22, 2026Jul 22, 2026

• MPC-Classifier

  Public
  Programmatic classifier of multiple primary cancers using IARC criteria

  Python

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•11 pull request•Updated Jul 14, 2026Jul 14, 2026

• igo-landing-page

  Public
  JavaScript

  •11 fork•00 stars•00 issues•66 pull requests•Updated Jul 6, 2026Jul 6, 2026

• ddlps-progression

  Public
  Analysis code for a paired WD/DDLPS multi-platform progression study.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 30, 2026Jun 30, 2026

• ridgeback

  Public
  Toil API

  Python

  •

  Apache License 2.0

  •22 forks•11 star•3838 issues•44 pull requests•Updated Jun 24, 2026Jun 24, 2026

• igo-sample-submission-node

  Public
  Sample Submission API written in node.js

  JavaScript

  •22 forks•00 stars•11 issue•3131 pull requests•Updated Jun 22, 2026Jun 22, 2026

• smile-client

  Public
  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 15, 2026Jun 15, 2026

• cbsp-hackathon

  Public
  Computational Biology Summer Program Hackathon

  Jupyter Notebook

  •

  MIT License

  •2020 forks•1414 stars•11 issue•22 pull requests•Updated Jun 12, 2026Jun 12, 2026

• ACCESS-Pipeline

  Public
  cfDNA Sequencing Pipeline with UMI

  cancer-genomics

  cancer-genomics

  Python

  •

  MIT License

  •33 forks•1111 stars•3838 issues•1414 pull requests•Updated Jun 11, 2026Jun 11, 2026

• beagle_cli

  Public
  Beagle API Command Line Utility

  Python

  •11 fork•11 star•88 issues•33 pull requests•Updated Jun 10, 2026Jun 10, 2026

• vcf2maf

  Public
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  perlvcfmaf+ 2

  perlvcfmafvepisoforms

  Perl

  •

  Other

  •219219 forks•419419 stars•99 issues•11 pull request•Updated May 25, 2026May 25, 2026