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    76 repositories

    • hatch-protobuf

      Public
      Hatch plugin for generating Python files from Protocol Buffers .proto files
      Python
      •
      Other
      •5•14•1•0•Updated Aug 25, 2026Aug 25, 2026

    • pod5-file-format

      Public
      Pod5: a high performance file format for nanopore reads.
      nanoporefile-formatapache-arrow
      nanoporefile-formatapache-arrow
      C++
      •
      Other
      •41•176•44•3•Updated Aug 24, 2026Aug 24, 2026

    • dorado

      Public
      Oxford Nanopore's Basecaller
      nanoporegenomicslibtorch
      nanoporegenomicslibtorchbasecalling
      C++
      •
      Other
      •127•863•89•4•Updated Jul 30, 2026Jul 30, 2026

    • minknow_api

      Public
      Protobuf and gRPC specifications for the MinKNOW API
      Python
      •
      Other
      •16•72•44•2•Updated Jul 22, 2026Jul 22, 2026

    • ont-minimap2

      Public
      Cross platform builds for minimap2
      CMake
      •3•8•0•0•Updated Jul 15, 2026Jul 15, 2026

    • modkit

      Public
      A bioinformatics tool for working with modified bases
      nanoporemethylationmodified-bases
      nanoporemethylationmodified-bases
      Rust
      •
      Other
      •30•272•300•22•Updated Jul 14, 2026Jul 14, 2026

    • pomoxis

      Public
      Analysis components from Oxford Nanopore Research
      Python
      •
      Other
      •22•99•10•1•Updated Jul 1, 2026Jul 1, 2026

    • medaka

      Public
      Sequence correction provided by ONT Research
      nanoporemedaka
      nanoporemedaka
      Python
      •
      Other
      •90•520•28•3•Updated May 20, 2026May 20, 2026

    • rerio

      Public
      Research release basecalling models and configurations
      nanoporebasecalling
      nanoporebasecalling
      Python
      •
      Other
      •11•120•5•1•Updated May 20, 2026May 20, 2026

    • ont-output-specifications

      Public
      Specifications for output files from MinKNOW, dorado and others
      Python
      •0•6•0•0•Updated Mar 18, 2026Mar 18, 2026

    • bonito

      Public
      A PyTorch Basecaller for Oxford Nanopore Reads
      nanoporepytorchbasecalling
      nanoporepytorchbasecalling
      Python
      •
      Other
      •142•436•4•2•Updated Feb 20, 2026Feb 20, 2026

    • pyspoa

      Public
      Python bindings to spoa
      nanoporealignmentpoa
      nanoporealignmentpoamultiple-sequence-alignment
      Python
      •
      Other
      •4•22•4•0•Updated Dec 3, 2025Dec 3, 2025

    • pomfret

      Public
      C
      •3•27•2•1•Updated Nov 14, 2025Nov 14, 2025

    • dorado-docs

      Public
      Dorado Documentation
      Python
      •
      Other
      •1•7•0•0•Updated Aug 4, 2025Aug 4, 2025

    • awesome-nanopore

      Public
      A curated list of awesome nanopore analysis tools.
      MIT License
      •62•0•0•0•Updated Jul 2, 2025Jul 2, 2025

    • ont-spectre

      Public
      Python
      •
      Other
      •4•14•7•1•Updated May 2, 2025May 2, 2025

    • vbz_compression

      Public
      VBZ compression plugin for nanopore signal data
      compressionnanoporehdf5
      compressionnanoporehdf5
      C++
      •
      Mozilla Public License 2.0
      •13•44•21•1•Updated Apr 7, 2025Apr 7, 2025

    • homebrew-tap

      Public
      Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.
      homebrewnanoporecasks
      homebrewnanoporecasksepi2me
      Ruby
      •0•7•0•0•Updated Dec 24, 2024Dec 24, 2024

    • read_until_api

      Public
      Read Until client library for Nanopore Sequencing
      Python
      •
      Other
      •12•108•0•0•Updated Sep 25, 2024Sep 25, 2024

    • remora

      Public
      Methylation/modified base calling separated from basecalling.
      nanoporemethylationbasecalling
      nanoporemethylationbasecalling
      Python
      •
      Other
      •29•188•17•1•Updated Sep 17, 2024Sep 17, 2024

    • sqlpad

      Public
      Web-based SQL editor run in your own private cloud. Supports MySQL, Postgres, SQL Server, Vertica, Crate, ClickHouse, Trino, Presto, SAP HANA, Cassandra, Snowfl…
      JavaScript
      •
      MIT License
      •819•0•0•0•Updated May 14, 2024May 14, 2024

    • DTR-phage-pipeline

      Public
      Python
      •
      Mozilla Public License 2.0
      •6•18•2•1•Updated Mar 11, 2024Mar 11, 2024

    • ont_fast5_api

      Public
      Oxford Nanopore Technologies fast5 API software
      Python
      •
      Other
      •31•155•13•2•Updated Feb 27, 2024Feb 27, 2024

    • pipeline-umi-amplicon

      Public
      Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
      Python
      •
      Other
      •14•35•18•3•Updated Feb 27, 2024Feb 27, 2024

    • linux4.9-minit

      Public
      ONT fork of Linux for NVIDIA Tegra based devices
      C
      •
      Other
      •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • kmer_models

      Public
      Predictive kmer models for development use
      Mozilla Public License 2.0
      •20•64•0•0•Updated Jun 6, 2023Jun 6, 2023

    • duplex-tools

      Public
      Splitting of sequence reads by internal adapter sequence search
      Python
      •
      Other
      •8•51•21•0•Updated May 30, 2023May 30, 2023

    • megalodon

      Public
      Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the informatio…
      epigeneticsvariant-callingbasecalling
      epigeneticsvariant-callingbasecallingguppy
      Python
      •
      Other
      •27•205•47•0•Updated May 4, 2023May 4, 2023

    • tombo

      Public
      Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
      epigenetics
      epigenetics
      Python
      •
      Other
      •55•232•133•2•Updated May 4, 2023May 4, 2023

    • lc23-poster-avian-flu

      Public
      Apache License 2.0
      •0•0•0•0•Updated Apr 21, 2023Apr 21, 2023
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