All

26 repositories

seurat
Public
R toolkit for single cell genomics
cran single-cell-genomics single-cell-rna-seq
cran single-cell-genomics single-cell-rna-seq human-cell-atlas
R
•
Other
•984•2.7k•223•30•Updated May 4, 2026May 4, 2026
scSLIDE
Public
R
•
Other
•0•9•3•2•Updated Apr 29, 2026Apr 29, 2026
azimuth_website
Public
HTML
•0•1•0•1•Updated Apr 28, 2026Apr 28, 2026
seurat-docker
Public
Docker images of Seurat
docker single-cell single-cell-genomics
docker single-cell single-cell-genomics single-cell-analysis human-cell-atlas
Dockerfile
•9•9•0•0•Updated Apr 28, 2026Apr 28, 2026
seurat-object
Public
R
•
Other
•35•35•43•5•Updated Apr 11, 2026Apr 11, 2026
panhumanpy
Public
Python
•1•26•4•5•Updated Mar 30, 2026Mar 30, 2026
Mixscale
Public
R
•3•27•17•0•Updated Mar 12, 2026Mar 12, 2026
AzimuthAPI
Public
R
•
MIT License
•1•5•5•0•Updated Feb 27, 2026Feb 27, 2026
seurat-wrappers
Public
Community-provided extensions to Seurat
community single-cell-genomics single-cell-analysis
community single-cell-genomics single-cell-analysis
R
•
GNU General Public License v3.0
•145•361•90•20•Updated Feb 17, 2026Feb 17, 2026
rna-fingerprinting
Public
R
•
Other
•1•10•0•0•Updated Feb 17, 2026Feb 17, 2026
sctransform
Public
R package for modeling single cell UMI expression data using regularized negative binomial regression
R
•
GNU General Public License v3.0
•36•258•49•0•Updated Jan 10, 2026Jan 10, 2026
rna-fingerprinting-data
Public
R
•0•0•0•0•Updated Sep 16, 2025Sep 16, 2025
azimuth-references
Public
R
•10•26•11•1•Updated May 16, 2025May 16, 2025
seurat-data
Public
Dataset distribution for Seurat
datasets single-cell single-cell-genomics
datasets single-cell single-cell-genomics
R
•
GNU General Public License v3.0
•45•153•38•1•Updated Mar 6, 2025Mar 6, 2025
satijalab.r-universe.dev
Public
0•0•0•0•Updated Jan 7, 2025Jan 7, 2025
azimuth
Public
A Shiny web app for mapping datasets using Seurat v4
single-cell-genomics single-cell-rna-seq shiny-app
single-cell-genomics single-cell-rna-seq shiny-app
HTML
•
GNU General Public License v3.0
•44•145•104•6•Updated Nov 5, 2024Nov 5, 2024
PASTA
Public
R
•
Other
•8•21•8•1•Updated Aug 26, 2024Aug 26, 2024
scChromHMM
Public
🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.
single-cell histone-modifications chromatin-state
single-cell histone-modifications chromatin-state
Rust
•
BSD 3-Clause "New" or "Revised" License
•4•30•3•0•Updated Sep 9, 2021Sep 9, 2021
azimuth-meta-analysis
Public
R
•0•2•0•0•Updated Jun 14, 2021Jun 14, 2021
AzimuthDashboard
Public
R
•
GNU General Public License v3.0
•0•0•0•0•Updated Feb 16, 2021Feb 16, 2021
lung-ccf
Public
Central repo to deposit code for lung CCF project
Jupyter Notebook
•0•2•0•0•Updated Feb 12, 2020Feb 12, 2020
controls
Public
Jupyter Notebook
•1•0•0•0•Updated Nov 20, 2019Nov 20, 2019
data
Public
1•0•0•0•Updated Nov 20, 2019Nov 20, 2019
Integration2019
Public
R
•8•17•3•0•Updated Jun 5, 2019Jun 5, 2019
gdown.pl
Public
Google Drive direct download of big files
Perl
•
GNU General Public License v3.0
•188•0•0•0•Updated Feb 3, 2019Feb 3, 2019
hca-jamboree-how-many-cells
Public
MIT License
•7•0•0•0•Updated Apr 10, 2018Apr 10, 2018

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satijalab

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All

26 repositories

seurat

scSLIDE

azimuth_website

seurat-docker

seurat-object

panhumanpy

Mixscale

AzimuthAPI

seurat-wrappers

rna-fingerprinting

sctransform

rna-fingerprinting-data

azimuth-references

seurat-data

satijalab.r-universe.dev

azimuth

PASTA

scChromHMM

azimuth-meta-analysis

AzimuthDashboard

lung-ccf

controls

data

Integration2019

gdown.pl

hca-jamboree-how-many-cells

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All

Repositories list

26 repositories