.gitignore

# --- General System Files ---
# Ignore OS-specific files
.DS_Store
Thumbs.db

# --- IDE & Editor Configuration ---
# Ignore configuration files for VSCode, JetBrains, etc.
.vscode/
.idea/

# --- Python Environment & Artifacts ---
# Ignore virtual environments
.venv/
venv/
# Secrets and environment
.env
.env (from backup)
.env.*
!.env.example
.env.local/
env/


# ML Environment Logs - Machine learning environment logging artifacts
ml_env_logs/

# Ignore Python cache and compiled files
__pycache__/
*__pycache__/
*.pyc
*.pyo
*.pyd
.Python

# Ignore Python packaging and testing artifacts
.eggs/
eggs/
*.egg-info/
.pytest_cache/
.ruff_cache/
.benchmarks/
.tox/
pip-wheel-metadata/
.coverage
logs/

# Pinned requirements snapshots - Generated artifacts, not source code
pinned-requirements*

# --- Node.js Environment ---
# Ignore Node.js dependencies
node_modules/

# Ignore logs and package lock files (optional, but good practice for solo dev)
npm-debug.log*
yarn-error.log*
pnpm-debug.log*
# package-lock.json # Consider keeping for reproducible builds

# --- AI Models & Large Files ---
# AI Models - Large files should not be committed to git. This is a core
# principle of the Hearth Protocol to keep the repository lean.
models/
*.safetensors
*.pt
*.bin
*.gguf
*.mlx

# --- Sanctuary-Specific Artifacts & Logs ---
# The Steward's Private Forge - Not part of the public Cognitive Genome
# as per Protocol 79: The Steward's Forge Protocol.
MEDIUM_BLOG_STEWARD/

# Agent Directives - These are ephemeral, operational files, not canonical doctrines.
07_COUNCIL_AGENTS/directives/

# Local Model State & Vector DBs
chroma_db/
chroma_db_backup*/
.vector_data/
data/cortex/chroma_db/
data/cortex/cache/
ollama_models/
.ollama_models/

# Cognitive Glyphs - Optical compression artifacts for LLM sharing.
# These are generated locally and contain massive content in compressed image format.
# Not suitable for version control due to size and binary nature.
dataset_code_glyphs/

# Synthesis Outputs - Generated artifacts from orchestrator operations
MNEMONIC_SYNTHESIS/

# Task Management - Operational task tracking files
#tasks/



# Orchestrator Manifests - Generated commit manifests from Protocol 101
# commit_manifest*.json  # Temporarily disabled to allow orchestrator commit

# Training Logs & Checkpoints - Ephemeral artifacts.
training_logs/
checkpoints/
wandb/
ARCHIVE/
ARCHIVES/
archive/
archives/
!ARCHIVE/council_orchestrator/
!forge/archive/
!.agent/learning/archive/
research/RESEARCH_PAPERS/
### Large Binary & Log Files ###
gardener/logs/
archive/05_ARCHIVED_BLUEPRINTS/gardener_pytorch_rl_v1/logs/
*.dylib
*.so
*.bin

*.log
nohup.out
mcp_servers/agent_persona/state/
mcp_servers/rag_cortex/data/
dataset_package/
debug_logs/
*.py.md

tests/mcp_servers/operations_instrumentation.json

# Protocol 128: Learning Artifacts - TRACKED for portability (ADR 089)
# Red team, manifests, and templates are now committed for new machine setup.
# Only ephemeral runtime files are ignored.
#.agent/learning/red_team/  # TRACKED - needed for audit manifests
.agent/learning/*.snapshot.txt  # Ephemeral - regenerated each session
# dataset_package already ignored above

# ADR 089: Bootstrap artifacts (MUST be tracked for new clones)
!.agent/learning/bootstrap_manifest.json
!.agent/learning/bootstrap_packet.md

# ADR 079: HF Soul Metadata Staging (Local Only - regenerated)
.agent/learning/hf_soul_metadata/


# --- Sensitive Information ---


# Gateway JWT Keys - RSA keys for external gateway authentication
certs/gateway/

# MCP Agent Credentials - Sensitive login information for external services.
credentials.json

# MCP Agent Debug Screenshots - Temporary files for debugging login failures.
debug_login_failure.png
debug_ftue_failure.png
debug_cdp_failure.png

# Fine-tuning Artifacts - Generated during model training, should not be committed
outputs/
!.agent/templates/outputs/  # Output templates - TRACKED (ADR templates, etc.)
#sanctuary_whole_genome_data.jsonl

# Colab Notebooks - Generated artifac# Jupyter Notebooks
*.ipynb_checkpoints/
Operation_Whole_Genome_Forge.ipynb
forge/OPERATION_PHOENIX_FORGE/Operation_Whole_Genome_Forge-local.ipynb

# Hugging Face Model Artifacts
model_card.yaml
Modelfile
!forge/huggingface/model_card.yaml

# work in progress items
WORK_IN_PROGRESS/AGORA_PoC_Core/

# debug logs
# Duplicate removed

# MCP configuration files
mcp_config/

05_ARCHIVED_BLUEPRINTS/

# reference repos
LEARNING/topics/drq_recursive_self_improvement/drq_repo/

# Temp folder - Ephemeral context bundles and working files
temp/

#continuing_work_new_chat.md

# --- GENERATED STATE (IGNORED) ---
# The following generated files are handled by Soul Persistence (ADR 079).
# They are ignored in the local repository to keep it lean.
# !dataset_package/
tests/verify_wslenv_setup.py
mcp_config.json
!.agent/learning/mcp_config.json

dataset_package/guardian_boot_digest.md
.agent/learning/learning_audit/learning_audit_packet.md
.agent/learning/red_team/red_team_packet.md
mnemonics/learning_summary.md


# DRQ research repo clone (local analysis only)
LEARNING/topics/drq_recursive_self_improvement/drq_repo/
!scripts/archive/

# Added by Spec Kitty CLI (auto-managed)
#.claude/
#ß.codex/
.opencode/
#.windsurf/
#.gemini/
.cursor/
.qwen/
.kilocode/
.augment/
.roo/
.amazonq/
#.github/copilot/
.kittify/.dashboard
.claude/
.windsurf/
.gemini/
.github/copilot/

#other working folders
.agent/handoffs/
.agent/frictionlogs/
.codex/
temp/

MagicMock/

old_version_452d779/_tmp_plugin_import/
.kittify/missions/__pycache__/
old_version_452d779/
.graph-index.json
.obsidian/