Follow-up review fixes for noodles BAM migration (#115) #466
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| permissions: | |
| contents: read | |
| env: | |
| CARGO_TERM_COLOR: always | |
| CXX: g++ | |
| jobs: | |
| test: | |
| name: Test (${{ matrix.name }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: linux-x86_64 | |
| os: ubuntu-latest | |
| - name: linux-x86_64-v3 | |
| os: ubuntu-latest | |
| target_cpu: x86-64-v3 | |
| - name: macos-aarch64 | |
| os: macos-latest | |
| steps: | |
| - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3 | |
| with: | |
| persist-credentials: false | |
| - name: Install Rust toolchain | |
| uses: dtolnay/rust-toolchain@e97e2d8cc328f1b50210efc529dca0028893a2d9 # v1 | |
| with: | |
| toolchain: stable | |
| - name: Install Linux build deps | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y g++ libfontconfig1-dev pkg-config | |
| - name: Install macOS build deps | |
| if: runner.os == 'macOS' | |
| run: brew install fontconfig | |
| - uses: Swatinem/rust-cache@c19371144df3bb44fab255c43d04cbc2ab54d1c4 # ratchet:Swatinem/rust-cache@v2.9.1 | |
| - name: Detect host triple | |
| if: matrix.target_cpu | |
| run: echo "HOST_TRIPLE=$(rustc -vV | awk '/^host:/ {print $2}')" >> "$GITHUB_ENV" | |
| - name: Build | |
| run: > | |
| cargo build --release | |
| ${TARGET_CPU:+--target "$HOST_TRIPLE" --config "target.'$HOST_TRIPLE'.rustflags=['-C', 'target-cpu=$TARGET_CPU']"} | |
| env: | |
| TARGET_CPU: ${{ matrix.target_cpu || '' }} | |
| - name: Test | |
| run: > | |
| cargo test --release | |
| ${TARGET_CPU:+--target "$HOST_TRIPLE" --config "target.'$HOST_TRIPLE'.rustflags=['-C', 'target-cpu=$TARGET_CPU']"} | |
| env: | |
| TARGET_CPU: ${{ matrix.target_cpu || '' }} | |
| fmt: | |
| name: Formatting | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3 | |
| with: | |
| persist-credentials: false | |
| - uses: dtolnay/rust-toolchain@e97e2d8cc328f1b50210efc529dca0028893a2d9 # v1 | |
| with: | |
| toolchain: stable | |
| components: rustfmt | |
| - run: cargo fmt --check | |
| clippy: | |
| name: Clippy | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3 | |
| with: | |
| persist-credentials: false | |
| - name: Install Rust toolchain | |
| uses: dtolnay/rust-toolchain@e97e2d8cc328f1b50210efc529dca0028893a2d9 # v1 | |
| with: | |
| toolchain: stable | |
| components: clippy | |
| - name: Install Linux build deps | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y g++ libfontconfig1-dev pkg-config | |
| - uses: Swatinem/rust-cache@c19371144df3bb44fab255c43d04cbc2ab54d1c4 # ratchet:Swatinem/rust-cache@v2.9.1 | |
| - run: cargo clippy -- -D warnings | |
| msrv: | |
| name: MSRV check | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3 | |
| with: | |
| persist-credentials: false | |
| - name: Install Rust MSRV toolchain | |
| uses: dtolnay/rust-toolchain@e97e2d8cc328f1b50210efc529dca0028893a2d9 # v1 | |
| with: | |
| toolchain: "1.89" | |
| - name: Install Linux build deps | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y g++ libfontconfig1-dev pkg-config | |
| - uses: Swatinem/rust-cache@c19371144df3bb44fab255c43d04cbc2ab54d1c4 # ratchet:Swatinem/rust-cache@v2.9.1 | |
| - name: Check MSRV compiles | |
| run: cargo check | |
| audit: | |
| name: Security audit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@df4cb1c069e1874edd31b4311f1884172cec0e10 # v6.0.3 | |
| with: | |
| persist-credentials: false | |
| - name: Install cargo-audit | |
| run: cargo install cargo-audit | |
| - name: Run cargo audit | |
| run: cargo audit |