0.0.18 #96
Workflow file for this run
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| name: release-main | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| debug_tmate: | |
| description: "Open an interactive tmate debug session if a job fails" | |
| type: boolean | |
| default: false | |
| release: | |
| types: [published] | |
| branches: [main] | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: [windows-latest, ubuntu-latest, ubuntu-24.04-arm, macos-15] | |
| glibc: [2_28, 2_34] | |
| # glibc (manylinux) only applies to the Linux builds. Exclude the duplicate | |
| # 2_34 combination for the non-Linux OSes so macOS/Windows build once each | |
| # (otherwise they would build the identical wheel twice, once per glibc value). | |
| exclude: | |
| - os: windows-latest | |
| glibc: 2_34 | |
| - os: macos-15 | |
| glibc: 2_34 | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Successful builds take ~35-60 min; cap well under the 6h default so a stuck | |
| # job (e.g. a hung publish) fails fast instead of burning a runner for 6 hours. | |
| timeout-minutes: 180 | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Check out | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| fetch-depth: 2 | |
| - name: remove nativelibs and localsolvers | |
| run: rm -rf vcell_submodule/nativelibs vcell_submodule/localsolvers | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - uses: abatilo/actions-poetry@v3 | |
| - name: setup graalvm for static native build | |
| uses: graalvm/setup-graalvm@v1 | |
| with: | |
| java-version: "23" | |
| distribution: "graalvm-community" | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| native-image-job-reports: "true" | |
| cache: "maven" | |
| - name: Set MACOSX_DEPLOYMENT_TARGET used by cibuildwheel | |
| if: ${{ startsWith(matrix.os, 'macos') }} | |
| run: | | |
| echo "MACOSX_DEPLOYMENT_TARGET=13.0" >> $GITHUB_ENV | |
| echo "NATIVE_IMAGE_OPTIONS=--native-compiler-options=-mmacosx-version-min=13.0 -H:NativeLinkerOption=-mmacosx-version-min=13.0" >> $GITHUB_ENV | |
| - name: Set cibuildwheel archs | |
| if: ${{ startsWith(matrix.os, 'ubuntu') }} | |
| run: | | |
| ARCH=$(uname -m) | |
| echo "ARCH_DEF=$ARCH" >> $GITHUB_ENV | |
| echo "MANYLINUX_IMAGE_TARGET=ghcr.io/virtualcell/manylinux_${{ matrix.glibc }}_$ARCH:latest" >> $GITHUB_ENV | |
| # libvcell is pure Python + a ctypes-loaded GraalVM native library (no CPython | |
| # extension), so the wheel is not tied to a Python version. Build a single | |
| # interpreter per platform and retag it to py3-none below. | |
| echo "CIBW_BUILD_TARGETS=cp311-*" >> $GITHUB_ENV | |
| - name: Run cibuildwheel (Ubuntu, x86_64) | |
| uses: pypa/cibuildwheel@v3.4.0 | |
| if: ${{ startsWith(matrix.os, 'ubuntu') && env.ARCH_DEF == 'x86_64' }} | |
| env: | |
| CIBW_BUILD: "${{ env.CIBW_BUILD_TARGETS }}" | |
| CIBW_MANYLINUX_X86_64_IMAGE: "${{ env.MANYLINUX_IMAGE_TARGET }}" | |
| # CIBW_BUILD_VERBOSITY_LINUX: 2 | |
| - name: Run cibuildwheel (Ubuntu, aarch64) | |
| uses: pypa/cibuildwheel@v3.4.0 | |
| if: ${{ startsWith(matrix.os, 'ubuntu') && env.ARCH_DEF == 'aarch64' }} | |
| env: | |
| CIBW_BUILD: "${{ env.CIBW_BUILD_TARGETS }}" | |
| CIBW_MANYLINUX_AARCH64_IMAGE: "${{ env.MANYLINUX_IMAGE_TARGET }}" | |
| # CIBW_BUILD_VERBOSITY_LINUX: 2 | |
| - name: Run cibuildwheel | |
| if: ${{ !startsWith(matrix.os, 'ubuntu') }} | |
| run: | | |
| pip install cibuildwheel | |
| cibuildwheel --debug-traceback --output-dir wheelhouse | |
| env: | |
| CIBW_BUILD: "cp311-*" | |
| - name: Retag wheels as py3-none (ABI-independent, one wheel per platform) | |
| run: | | |
| python -m pip install --upgrade wheel | |
| for whl in wheelhouse/*.whl; do | |
| echo "retagging $whl" | |
| # Change cp311-cp311 -> py3-none, preserving the (manylinux/macosx/win) platform tag. | |
| # The bundled native lib is loaded via ctypes, so it has no CPython ABI dependency | |
| # and the resulting wheel installs on any supported Python 3.x. Requires-Python in | |
| # the wheel metadata still enforces the >=3.10 floor. | |
| python -m wheel tags --python-tag py3 --abi-tag none --remove "$whl" | |
| done | |
| ls -l wheelhouse | |
| - name: Copy wheels to dist directory | |
| run: | | |
| mkdir -p dist | |
| cp wheelhouse/*.whl dist/ | |
| - name: Publish to PyPI (dry run) | |
| run: | | |
| poetry config pypi-token.pypi "${{ secrets.PYPI_TOKEN }}" | |
| poetry publish --dry-run | |
| - name: Publish to PyPI (release-only - push to PyPI) | |
| run: | | |
| poetry config pypi-token.pypi "${{ secrets.PYPI_TOKEN }}" | |
| poetry publish --skip-existing | |
| if: github.event_name == 'release' | |
| # Only open a tmate session when explicitly requested via workflow_dispatch. | |
| # On a release event `inputs.debug_tmate` is false, so a failed job fails fast | |
| # instead of holding the runner open until the 6h job timeout. The step is also | |
| # bounded by timeout-minutes as a safety net. | |
| - name: Setup tmate | |
| if: ${{ failure() && inputs.debug_tmate }} | |
| timeout-minutes: 30 | |
| uses: mxschmitt/action-tmate@v3 | |
| with: | |
| limit-access-to-actor: true | |
| deploy-docs: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| fetch-depth: 2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - uses: abatilo/actions-poetry@v3 | |
| - name: setup graalvm for static native build | |
| uses: graalvm/setup-graalvm@v1 | |
| with: | |
| java-version: "23" | |
| distribution: "graalvm-community" | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| native-image-job-reports: "true" | |
| cache: "maven" | |
| - name: Install python dependencies | |
| run: poetry install --no-interaction | |
| - name: Deploy documentation | |
| run: poetry run mkdocs gh-deploy --force |