Analysis Guides - 10x Genomics

Analysis of 10x Genomics data is full of possibilities. We hope these guides help you navigate your exciting analysis journey.

https://www.10xgenomics.com/resources/analysis-guides

Table of Contents:

Below is a list of tutorials with notebook files available in Google Colab:

1. Trajectory Analysis using 10x Genomics Single Cell Gene Expression Data (Python)

2. Exploring Your Visium Data: A Spot Deconvolution Story (R)

3. Visium HD GSEA analysis (R)

4. Getting Started with Xenium In Situ Downstream Analysis in R: A Tutorial in Google Colab (R)

5. Visium HD Multi-sample Integration Analysis: an R Tutorial in Google Colab (R)

6. Getting Started with Xenium In Situ Downstream Analysis in Python SpatialData Ecosystem: A Tutorial in Google Colab (Python)

7. Xenium analysis workshop: Analyze a single Xenium sample using Python

8. Xenium analysis workshop: Integrate two Xenium samples using Python

9. Visium HD Multi-sample Analysis in Python: a Tutorial in Google Colab (R)