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i10: Explore whether this could be converted to an R package

enhancementNew feature or requestNew feature or request

Status: Open.

#10 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i8: Allow user to perform alternative normalization (e.g. TMM, TPM, etc) and export

Status: Open.

#8 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i7: List top DE genes for each comparison within the rendered 2.03-DEseq2.html

Status: Open.

#7 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i6: Generate visualization of top fGSEA results (e.g., heatmap, bar plot, GSEA ridge plot)

Status: Open.

#6 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i5: Plot top differentially expressed genes as violin plot (2.04)?

Status: Open.

#5 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i4: Move 4.03_Export_to_IPA.Rmd before 3.03-GSEA.Rmd #18

Status: Open.

#4 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i3: Add overrepresentation analysis capability

Status: Open.

#3 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i2: Build out bar plot capability for GSEA results

enhancementNew feature or requestNew feature or request

Status: Open.

#2 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021

i1: Identify and preprocess input dataset

Status: Open.

#1 In 10adavis/DESeq2_fGSEA_Flow;

· 10adavis opened on Dec 21, 2021