Adding support for Numba #192
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…ootstrap Also remove prange function from numba
# Conflicts: # dabest/_dabest_object.py # dabest/_modidx.py # dabest/misc_tools.py # dabest/plotter.py # nbs/API/dabest_object.ipynb # nbs/API/misc_tools.ipynb # nbs/API/plotter.ipynb # nbs/tests/mpl_image_tests/baseline_images/test_01_gardner_altman_unpaired_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_02_gardner_altman_unpaired_mediandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_03_gardner_altman_unpaired_hedges_g.png # nbs/tests/mpl_image_tests/baseline_images/test_04_gardner_altman_paired_hedges_g.png # nbs/tests/mpl_image_tests/baseline_images/test_04_gardner_altman_paired_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_05_cummings_two_group_unpaired_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_06_cummings_two_group_paired_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_07_cummings_multi_group_unpaired.png # nbs/tests/mpl_image_tests/baseline_images/test_08_cummings_multi_group_paired.png # nbs/tests/mpl_image_tests/baseline_images/test_09_cummings_shared_control.png # nbs/tests/mpl_image_tests/baseline_images/test_101_gardner_altman_unpaired_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_103_cummings_two_group_unpaired_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_105_cummings_multi_group_unpaired_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_106_cummings_shared_control_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_107_cummings_multi_groups_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_109_gardner_altman_ylabel.png # nbs/tests/mpl_image_tests/baseline_images/test_10_cummings_multi_groups.png # nbs/tests/mpl_image_tests/baseline_images/test_110_change_fig_size.png # nbs/tests/mpl_image_tests/baseline_images/test_111_change_palette_b.png # nbs/tests/mpl_image_tests/baseline_images/test_112_change_palette_c.png # nbs/tests/mpl_image_tests/baseline_images/test_113_desat.png # nbs/tests/mpl_image_tests/baseline_images/test_114_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_115_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_116_ticker_gardner_altman.png # nbs/tests/mpl_image_tests/baseline_images/test_117_err_color.png # nbs/tests/mpl_image_tests/baseline_images/test_118_cummings_two_group_unpaired_meandiff_bar_width.png # nbs/tests/mpl_image_tests/baseline_images/test_119_wide_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_11_inset_plots.png # nbs/tests/mpl_image_tests/baseline_images/test_120_long_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_121_cohens_h_gardner_altman.png # nbs/tests/mpl_image_tests/baseline_images/test_122_cohens_h_cummings.png # nbs/tests/mpl_image_tests/baseline_images/test_123_sankey_gardner_altman.png # nbs/tests/mpl_image_tests/baseline_images/test_124_sankey_cummings.png # nbs/tests/mpl_image_tests/baseline_images/test_125_sankey_2paired_groups.png # nbs/tests/mpl_image_tests/baseline_images/test_126_sankey_2sequential_groups.png # nbs/tests/mpl_image_tests/baseline_images/test_127_sankey_multi_group_paired.png # nbs/tests/mpl_image_tests/baseline_images/test_128_sankey_transparency.png # nbs/tests/mpl_image_tests/baseline_images/test_129_zero_to_zero.png # nbs/tests/mpl_image_tests/baseline_images/test_12_gardner_altman_ylabel.png # nbs/tests/mpl_image_tests/baseline_images/test_130_zero_to_one.png # nbs/tests/mpl_image_tests/baseline_images/test_131_one_to_zero.png # nbs/tests/mpl_image_tests/baseline_images/test_132_shared_control_sankey_off.png # nbs/tests/mpl_image_tests/baseline_images/test_133_shared_control_flow_off.png # nbs/tests/mpl_image_tests/baseline_images/test_134_separate_control_sankey_off.png # nbs/tests/mpl_image_tests/baseline_images/test_135_separate_control_flow_off.png # nbs/tests/mpl_image_tests/baseline_images/test_136_style_sheets.png # nbs/tests/mpl_image_tests/baseline_images/test_13_multi_2group_color.png # nbs/tests/mpl_image_tests/baseline_images/test_14_gardner_altman_paired_color.png # nbs/tests/mpl_image_tests/baseline_images/test_15_change_palette_a.png # nbs/tests/mpl_image_tests/baseline_images/test_16_change_palette_b.png # nbs/tests/mpl_image_tests/baseline_images/test_17_change_palette_c.png # nbs/tests/mpl_image_tests/baseline_images/test_18_desat.png # nbs/tests/mpl_image_tests/baseline_images/test_19_dot_sizes.png # nbs/tests/mpl_image_tests/baseline_images/test_201_forest_plot_no_colorpalette.png # nbs/tests/mpl_image_tests/baseline_images/test_202_forest_plot_with_colorpalette.png # nbs/tests/mpl_image_tests/baseline_images/test_203_horizontal_forest_plot_no_colorpalette.png # nbs/tests/mpl_image_tests/baseline_images/test_204_horizontal_forest_plot_with_colorpalette.png # nbs/tests/mpl_image_tests/baseline_images/test_205_forest_mini_meta_horizontal.png # nbs/tests/mpl_image_tests/baseline_images/test_206_forest_mini_meta.png # nbs/tests/mpl_image_tests/baseline_images/test_20_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_21_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_22_ticker_gardner_altman.png # nbs/tests/mpl_image_tests/baseline_images/test_23_ticker_cumming.png # nbs/tests/mpl_image_tests/baseline_images/test_24_wide_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_25_long_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_26_slopegraph_kwargs.png # nbs/tests/mpl_image_tests/baseline_images/test_27_gardner_altman_reflines_kwargs.png # nbs/tests/mpl_image_tests/baseline_images/test_28_unpaired_cumming_reflines_kwargs.png # nbs/tests/mpl_image_tests/baseline_images/test_29_paired_cumming_slopegraph_reflines_kwargs.png # nbs/tests/mpl_image_tests/baseline_images/test_30_sequential_cumming_slopegraph.png # nbs/tests/mpl_image_tests/baseline_images/test_31_baseline_cumming_slopegraph.png # nbs/tests/mpl_image_tests/baseline_images/test_47_cummings_unpaired_delta_delta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_48_cummings_sequential_delta_delta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_49_cummings_baseline_delta_delta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_50_delta_plot_ylabel.png # nbs/tests/mpl_image_tests/baseline_images/test_51_delta_plot_change_palette_a.png # nbs/tests/mpl_image_tests/baseline_images/test_52_delta_specified.png # nbs/tests/mpl_image_tests/baseline_images/test_53_delta_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_54_delta_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_55_delta_median_diff.png # nbs/tests/mpl_image_tests/baseline_images/test_56_delta_cohens_d.png # nbs/tests/mpl_image_tests/baseline_images/test_57_delta_show_delta2.png # nbs/tests/mpl_image_tests/baseline_images/test_58_delta_axes_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_59_delta_axes_invert_ylim_not_showing_delta2.png # nbs/tests/mpl_image_tests/baseline_images/test_60_cummings_unpaired_mini_meta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_61_cummings_sequential_mini_meta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_62_cummings_baseline_mini_meta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_63_mini_meta_plot_ylabel.png # nbs/tests/mpl_image_tests/baseline_images/test_64_mini_meta_plot_change_palette_a.png # nbs/tests/mpl_image_tests/baseline_images/test_65_mini_meta_dot_sizes.png # nbs/tests/mpl_image_tests/baseline_images/test_66_mini_meta_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_67_mini_meta_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_68_mini_meta_median_diff.png # nbs/tests/mpl_image_tests/baseline_images/test_69_mini_meta_cohens_d.png # nbs/tests/mpl_image_tests/baseline_images/test_70_mini_meta_not_show.png # nbs/tests/mpl_image_tests/baseline_images/test_71_unpaired_delta_g.png # nbs/tests/mpl_image_tests/baseline_images/test_72_sequential_delta_g.png # nbs/tests/mpl_image_tests/baseline_images/test_73_baseline_delta_g.png # nbs/tests/mpl_image_tests/baseline_images/test_99_style_sheets.png # settings.ini
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commit 7c2e9c9 Merge: d3d531f 1c660f8 Author: Jacob Luke <[email protected]> Date: Fri Dec 20 11:25:45 2024 +0800 Merge pull request #191 from ACCLAB/baseline_ec Baseline ec commit 1c660f8 Author: Jacobluke- <[email protected]> Date: Fri Oct 25 14:15:32 2024 +0800 pandas deprecation related to categories commit 5df90f8 Author: Jacobluke- <[email protected]> Date: Mon Oct 21 17:09:15 2024 +0800 Bug fix and zero-dot effect size for baseline Fixed a bug where some baseline line error curve for certain controls are wrongly plotted as the previous one. The implementation is a bit different from dabestr becuase R allows nesting DataFrame where Python doesn’t. commit 994003c Author: Jacobluke- <[email protected]> Date: Fri Oct 18 14:51:50 2024 +0800 Add tests for baseline curve commit 91ff9be Author: Jacobluke- <[email protected]> Date: Fri Oct 18 14:51:38 2024 +0800 Prevent deprecation warning for pandas commit 2fc8052 Author: Jacobluke- <[email protected]> Date: Fri Oct 18 14:15:02 2024 +0800 Add support for baseline_curve
# Conflicts: # dabest/_dabest_object.py # nbs/API/dabest_object.ipynb # nbs/tests/mpl_image_tests/baseline_images/test_05_cummings_two_group_unpaired_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_06_cummings_two_group_paired_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_07_cummings_multi_group_unpaired.png # nbs/tests/mpl_image_tests/baseline_images/test_08_cummings_multi_group_paired.png # nbs/tests/mpl_image_tests/baseline_images/test_09_cummings_shared_control.png # nbs/tests/mpl_image_tests/baseline_images/test_103_cummings_two_group_unpaired_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_105_cummings_multi_group_unpaired_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_106_cummings_shared_control_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_107_cummings_multi_groups_propdiff.png # nbs/tests/mpl_image_tests/baseline_images/test_10_cummings_multi_groups.png # nbs/tests/mpl_image_tests/baseline_images/test_111_change_palette_b.png # nbs/tests/mpl_image_tests/baseline_images/test_112_change_palette_c.png # nbs/tests/mpl_image_tests/baseline_images/test_113_desat.png # nbs/tests/mpl_image_tests/baseline_images/test_114_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_115_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_118_cummings_two_group_unpaired_meandiff_bar_width.png # nbs/tests/mpl_image_tests/baseline_images/test_119_wide_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_11_inset_plots.png # nbs/tests/mpl_image_tests/baseline_images/test_120_long_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_122_cohens_h_cummings.png # nbs/tests/mpl_image_tests/baseline_images/test_123_sankey_gardner_altman.png # nbs/tests/mpl_image_tests/baseline_images/test_124_sankey_cummings.png # nbs/tests/mpl_image_tests/baseline_images/test_125_sankey_2paired_groups.png # nbs/tests/mpl_image_tests/baseline_images/test_126_sankey_2sequential_groups.png # nbs/tests/mpl_image_tests/baseline_images/test_127_sankey_multi_group_paired.png # nbs/tests/mpl_image_tests/baseline_images/test_128_sankey_transparency.png # nbs/tests/mpl_image_tests/baseline_images/test_132_shared_control_sankey_off.png # nbs/tests/mpl_image_tests/baseline_images/test_134_separate_control_sankey_off.png # nbs/tests/mpl_image_tests/baseline_images/test_136_style_sheets.png # nbs/tests/mpl_image_tests/baseline_images/test_13_multi_2group_color.png # nbs/tests/mpl_image_tests/baseline_images/test_15_change_palette_a.png # nbs/tests/mpl_image_tests/baseline_images/test_16_change_palette_b.png # nbs/tests/mpl_image_tests/baseline_images/test_17_change_palette_c.png # nbs/tests/mpl_image_tests/baseline_images/test_18_desat.png # nbs/tests/mpl_image_tests/baseline_images/test_19_dot_sizes.png # nbs/tests/mpl_image_tests/baseline_images/test_208_cummings_two_group_unpaired_meandiff_empty_circle.png # nbs/tests/mpl_image_tests/baseline_images/test_209_cummings_shared_control_meandiff_empty_circle.png # nbs/tests/mpl_image_tests/baseline_images/test_20_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_210_cummings_multi_groups_meandiff_empty_circle.png # nbs/tests/mpl_image_tests/baseline_images/test_211_cummings_multi_2_group_meandiff_empty_circle.png # nbs/tests/mpl_image_tests/baseline_images/test_212_cummings_unpaired_delta_delta_meandiff_empty_circle.png # nbs/tests/mpl_image_tests/baseline_images/test_213_cummings_unpaired_mini_meta_meandiff_empty_circle.png # nbs/tests/mpl_image_tests/baseline_images/test_214_change_idx_order_custom_palette_original.png # nbs/tests/mpl_image_tests/baseline_images/test_215_change_idx_order_custom_palette_new.png # nbs/tests/mpl_image_tests/baseline_images/test_216_cummings_multi_groups_meandiff_show_baseline_ec.png # nbs/tests/mpl_image_tests/baseline_images/test_217_cummings_multi_2_group_meandiff_show_baseline_ec.png # nbs/tests/mpl_image_tests/baseline_images/test_21_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_23_ticker_cumming.png # nbs/tests/mpl_image_tests/baseline_images/test_24_wide_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_25_long_df_nan.png # nbs/tests/mpl_image_tests/baseline_images/test_28_unpaired_cumming_reflines_kwargs.png # nbs/tests/mpl_image_tests/baseline_images/test_29_paired_cumming_slopegraph_reflines_kwargs.png # nbs/tests/mpl_image_tests/baseline_images/test_30_sequential_cumming_slopegraph.png # nbs/tests/mpl_image_tests/baseline_images/test_31_baseline_cumming_slopegraph.png # nbs/tests/mpl_image_tests/baseline_images/test_47_cummings_unpaired_delta_delta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_48_cummings_sequential_delta_delta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_49_cummings_baseline_delta_delta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_50_delta_plot_ylabel.png # nbs/tests/mpl_image_tests/baseline_images/test_51_delta_plot_change_palette_a.png # nbs/tests/mpl_image_tests/baseline_images/test_52_delta_specified.png # nbs/tests/mpl_image_tests/baseline_images/test_53_delta_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_54_delta_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_55_delta_median_diff.png # nbs/tests/mpl_image_tests/baseline_images/test_56_delta_cohens_d.png # nbs/tests/mpl_image_tests/baseline_images/test_57_delta_show_delta2.png # nbs/tests/mpl_image_tests/baseline_images/test_58_delta_axes_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_59_delta_axes_invert_ylim_not_showing_delta2.png # nbs/tests/mpl_image_tests/baseline_images/test_60_cummings_unpaired_mini_meta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_61_cummings_sequential_mini_meta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_62_cummings_baseline_mini_meta_meandiff.png # nbs/tests/mpl_image_tests/baseline_images/test_63_mini_meta_plot_ylabel.png # nbs/tests/mpl_image_tests/baseline_images/test_64_mini_meta_plot_change_palette_a.png # nbs/tests/mpl_image_tests/baseline_images/test_65_mini_meta_dot_sizes.png # nbs/tests/mpl_image_tests/baseline_images/test_66_mini_meta_change_ylims.png # nbs/tests/mpl_image_tests/baseline_images/test_67_mini_meta_invert_ylim.png # nbs/tests/mpl_image_tests/baseline_images/test_68_mini_meta_median_diff.png # nbs/tests/mpl_image_tests/baseline_images/test_69_mini_meta_cohens_d.png # nbs/tests/mpl_image_tests/baseline_images/test_70_mini_meta_not_show.png # nbs/tests/mpl_image_tests/baseline_images/test_71_unpaired_delta_g.png # nbs/tests/mpl_image_tests/baseline_images/test_72_sequential_delta_g.png # nbs/tests/mpl_image_tests/baseline_images/test_73_baseline_delta_g.png # nbs/tests/mpl_image_tests/baseline_images/test_99_style_sheets.png
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