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@dweindl dweindl commented Nov 10, 2025

Move modules and templates related to generating C++ code for simulation with sundials solvers to amici.exporters.sundials.

More to be moved later on.

@dweindl dweindl self-assigned this Nov 10, 2025
@dweindl dweindl force-pushed the reorganize_package branch 2 times, most recently from 1e5968d to 932f710 Compare November 10, 2025 20:17
Move modules and templates related to generating C++ code for simulation with sundials solvers to `amici.exporters.sundials`.
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codecov bot commented Nov 10, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.04%. Comparing base (2204711) to head (3d45590).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

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@@           Coverage Diff           @@
##             main    #3021   +/-   ##
=======================================
  Coverage   78.04%   78.04%           
=======================================
  Files         311      311           
  Lines       20597    20598    +1     
  Branches     1500     1499    -1     
=======================================
+ Hits        16074    16075    +1     
  Misses       4513     4513           
  Partials       10       10           
Flag Coverage Δ
cpp 70.34% <100.00%> (+<0.01%) ⬆️
cpp_python 36.77% <100.00%> (+<0.01%) ⬆️
petab 45.69% <100.00%> (+<0.01%) ⬆️
petab_sciml 13.65% <100.00%> (+<0.01%) ⬆️
python 69.34% <100.00%> (+<0.01%) ⬆️
sbmlsuite-jax 30.44% <100.00%> (+<0.01%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
python/sdist/amici/__init__.py 93.75% <ø> (ø)
python/sdist/amici/de_model.py 92.51% <ø> (ø)
python/sdist/amici/exporters/sundials/compile.py 68.42% <ø> (ø)
...on/sdist/amici/exporters/sundials/cxx_functions.py 97.14% <ø> (ø)
...n/sdist/amici/exporters/sundials/cxxcodeprinter.py 95.57% <ø> (ø)
python/sdist/amici/exporters/sundials/de_export.py 96.90% <100.00%> (ø)
...thon/sdist/amici/exporters/sundials/model_class.py 100.00% <ø> (ø)
python/sdist/amici/exporters/template.py 100.00% <ø> (ø)
python/sdist/amici/jax/nn.py 94.82% <ø> (ø)
python/sdist/amici/jax/ode_export.py 88.33% <ø> (ø)
... and 2 more
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@dweindl dweindl marked this pull request as ready for review November 10, 2025 20:43
@dweindl dweindl requested a review from a team as a code owner November 10, 2025 20:43
@dweindl dweindl merged commit 84b9d8d into AMICI-dev:main Nov 11, 2025
33 of 34 checks passed
@dweindl dweindl deleted the reorganize_package branch November 11, 2025 06:52
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2 participants