Skip to content

Conversation

@FFroehlich
Copy link
Member

No description provided.

@codecov
Copy link

codecov bot commented Nov 11, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.01%. Comparing base (b8c0fef) to head (a734905).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main    #3023      +/-   ##
==========================================
- Coverage   78.03%   78.01%   -0.02%     
==========================================
  Files         311      311              
  Lines       20584    20584              
  Branches     1499     1500       +1     
==========================================
- Hits        16063    16059       -4     
- Misses       4511     4515       +4     
  Partials       10       10              
Flag Coverage Δ
cpp 70.30% <ø> (-0.02%) ⬇️
cpp_python 36.74% <ø> (ø)
petab 45.71% <ø> (ø)
petab_sciml 13.65% <ø> (ø)
python 69.32% <ø> (-0.01%) ⬇️
sbmlsuite-jax 30.47% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
python/sdist/amici/__init__.py 93.75% <ø> (ø)
python/sdist/amici/de_model.py 92.51% <ø> (ø)
python/sdist/amici/de_model_components.py 93.10% <ø> (ø)
...n/sdist/amici/exporters/sundials/cxxcodeprinter.py 95.57% <ø> (ø)
python/sdist/amici/exporters/sundials/de_export.py 96.91% <ø> (ø)
python/sdist/amici/importers/antimony/__init__.py 82.35% <ø> (ø)
python/sdist/amici/importers/bngl/__init__.py 100.00% <ø> (ø)
python/sdist/amici/importers/pysb/__init__.py 94.54% <ø> (ø)
python/sdist/amici/importers/sbml/__init__.py 94.27% <ø> (ø)
...i/importers/sbml/conserved_quantities_demartino.py 65.69% <ø> (ø)
... and 14 more

... and 3 files with indirect coverage changes

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@FFroehlich FFroehlich marked this pull request as ready for review November 12, 2025 08:40
@FFroehlich FFroehlich requested a review from a team as a code owner November 12, 2025 08:40
@sonarqubecloud
Copy link

Copy link
Member

@dweindl dweindl left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

👍

)
from .exporters.sundials.cxxcodeprinter import csc_matrix
from .import_utils import (
from .importers.utils import (
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Okay for now, but I'd say we should make the core symbolic code not import anything from amici.importers, only vice verse. Can be addressed when moving de_model.py.

from toposort import toposort

from ...import_utils import symbol_with_assumptions
from amici.importers.utils import symbol_with_assumptions
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Similar to above, amici.exporters should not import anything from amici.importers, only from the symbolic middle layer.

@FFroehlich FFroehlich added this pull request to the merge queue Nov 12, 2025
Merged via the queue into main with commit df9523d Nov 12, 2025
31 of 32 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants