Harmonize Fixed parameter Names

[FFroehlich]

fixes #975

[codecov]

Codecov Report

❌ Patch coverage is 76.99115% with 52 lines in your changes missing coverage. Please review.
✅ Project coverage is 77.39%. Comparing base (e75c348) to head (df0b1b8).
⚠️ Report is 62 commits behind head on main.

Files with missing lines	Patch %	Lines
src/model.cpp	80.76%	10 Missing ⚠️
python/sdist/amici/adapters/fiddy.py	72.72%	3 Missing ⚠️
src/backwardproblem.cpp	0.00%	3 Missing ⚠️
models/model_calvetti_py/main.cpp	0.00%	2 Missing ⚠️
models/model_dirac_py/main.cpp	0.00%	2 Missing ⚠️
models/model_events_py/main.cpp	0.00%	2 Missing ⚠️
models/model_jakstat_adjoint_py/main.cpp	0.00%	2 Missing ⚠️
models/model_nested_events_py/main.cpp	0.00%	2 Missing ⚠️
models/model_neuron_py/main.cpp	0.00%	2 Missing ⚠️
models/model_robertson_py/main.cpp	0.00%	2 Missing ⚠️
... and 18 more

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3027      +/-   ##
==========================================
- Coverage   78.04%   77.39%   -0.66%     
==========================================
  Files         311      311              
  Lines       20590    20594       +4     
  Branches     1499     1499              
==========================================
- Hits        16069    15938     -131     
- Misses       4511     4646     +135     
  Partials       10       10              

Flag	Coverage Δ
cpp	70.32% <72.27%> (-0.02%)	⬇️
cpp_python	36.75% <27.72%> (-0.01%)	⬇️
petab	45.73% <47.09%> (+<0.01%)	⬆️
petab_sciml	13.66% <10.59%> (-0.01%)	⬇️
python	69.33% <70.90%> (-0.01%)	⬇️
sbmlsuite-jax	?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
include/amici/edata.h	100.00% <ø> (ø)
include/amici/model.h	78.04% <ø> (ø)
include/amici/serialization.h	95.17% <100.00%> (ø)
include/amici/simulation_parameters.h	100.00% <100.00%> (ø)
include/amici/solver_cvodes.h	100.00% <100.00%> (ø)
python/sdist/amici/constants.py	100.00% <100.00%> (ø)
python/sdist/amici/de_model.py	92.12% <100.00%> (-0.39%)	⬇️
python/sdist/amici/de_model_components.py	91.37% <100.00%> (-1.73%)	⬇️
python/sdist/amici/exporters/sundials/de_export.py	96.91% <ø> (ø)
python/sdist/amici/gradient_check.py	95.68% <100.00%> (ø)
... and 44 more

... and 6 files with indirect coverage changes

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[dweindl]

Notebook tests Ubuntu (3.11) fails due to the unfortunate pypesto dependency. Will update pypesto after this is merged.

We may want to consider moving that spline-parameter-estimation example to pypesto and just referencing it here.

[sonarqubecloud]

Quality Gate failed

Failed conditions
C Reliability Rating on New Code (required ≥ A)

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