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AMICI-dev / AMICI Public

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Implement event assignments in JAX#3080

Merged

BSnelling merged 29 commits intomainAMICI-dev/AMICI:mainfrom

bes/jax_event_assignmentsAMICI-dev/AMICI:bes/jax_event_assignmentsCopy head branch name to clipboard

Dec 15, 2025

Conversation Commits29 (29)Checks Files changed

Merged

Implement event assignments in JAX#3080
BSnelling merged 29 commits intomainfrom
bes/jax_event_assignments

Commits

Commits on Dec 11, 2025

event assignments jax - sbml cases 348 - 404
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committed
fix up sbml test cases - not implemented priority, update t_eps, fix heaviside init
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committed
initialValue False not implemented
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committed
try fix other test cases
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committed
Matrix only for JAX event assignments
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committed
params only in explicit triggers - and matrix only in JAX again
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committed
oops committed breakpoint
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committed
fix delta variables in deltax
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committed
new param _delta_x missing in solve calls
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committed
try simpler roots direction logic in handle event
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committed
try not logic in handle event
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committed
looking for initialValue test cases
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committed
add h = 0 check to handle event
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committed
do not update h pre-solve
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committed
handle_t0_event
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committed
reinstate time skip (hack diffrax bug?)
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committed
Update python/sdist/amici/jax/_simulation.py

BSnelling
and
FFroehlich
committed
Revert "Update python/sdist/amici/jax/_simulation.py"
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committed
rm clip controller
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committed
handle t0 event near zero
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committed
skip non-time dependent event assignment cases
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committed
fix sbml _symbols
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skip some more tests - NotImplemented discs
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committed

Commits on Dec 12, 2025

update implicit check and skip SalazarCavazos_MBoC2020 benchmark
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committed
empty set is not None
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committed
update solver settings for jax benchmarks
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keep Weber settings specific
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committed

Commits on Dec 15, 2025

review comments - remove x_old usage and add TODO/FIXMEs
BSnelling
committed
Merge branch 'main' into bes/jax_event_assignments
BSnelling
authored

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