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v0.10.20
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Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994 )
Fixed sensitivities for parameters in sigma expressions for Python/SBML in case provided expression was not just a single parameter ID
Enable parallel compilation of model files from Python (#997 ) based on AMICI_PARALLEL_COMPILE enviroment variable
Fixed computation of log-likelihood for log10-normal distributed noise
Added reinitializeFixedParameterInitialStates to ExpData (#1000 ) (breaking change : overrides settings in amici::Model)
Python model import now verifies that chosen model name is a valid identifier (Closes #928 )
Made w available in ReturnData (Closes #990 ) (#992 )
Fixed setting of log level when passing boolean values to verbose (#991 )
Documentation now on ReadTheDocs https://amici.readthedocs.io/en/
Use proper state/observable names in plotting functions (#979 )
PEtab support:
Adapt to most recent PEtab (0.1.5)
Extended support for import of PEtab models
Added support for computing cost function based on PEtab problem
Implemented handling of species in condition table
petab_import.import_model now provides reproducible parameter list (Closes #976 )
Fix python import error in import_petab_problem: Add absolute paths to python path, invalidate caches and reload (#970 )
Added example notebook
CI: PEtab test suite integrated in CI workflow
Added AMICI dockerfile and image deployment to dockerhub (#948 )
Removed mention of 'mex' in warning/error ids (#968 )
More informative errors on SWIG interface import failures (#959 )
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