I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.
- WEHI-Education/Workshop-intermediate-slurm - Intermedate Slurm Workshop source code using the Software Carpentry Workbench style. (1 day ago)
- WEHI-Education/Workshop-IntroToHPC-Slurm - RCP Training introducing HPC concepts and SLURM (1 day ago)
- tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (2 days ago)
- Adamtaranto/rusty-dot - A Python library for making fast dot-plot comparisons of DNA sequences powered by Rust FM-Index (5 days ago)
- m-lutze/KADAR - (6 days ago)
- dalofa/telomore (v0.4.1, 3 weeks ago) - Gotta find them telomeres
- Adamtaranto/tSplit (v0.3.0, 1 month ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
- flexidot-bio/flexidot (v2.1.0, 1 month ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses
- Adamtaranto/TIRmite (v1.3.0, 1 month ago) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
- tseemann/mlst (v2.32.2, 2 months ago) - 🆔 Scan contig files against PubMLST typing schemes