Skip to content

Commit 7f46f2f

Browse files
committed
rename scripts --> dev_scripts
1 parent f719bdf commit 7f46f2f

File tree

8 files changed

+9
-3
lines changed

8 files changed

+9
-3
lines changed

docs/res/guides/detailed_walkthrough.rst

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -119,11 +119,11 @@ Finally, the last tab lets you choose :
119119
* The models
120120

121121
* SegResNet is a lightweight model (low memory requirements) from MONAI originally designed for 3D fMRI data.
122-
* VNet is a heavier (than SegResNet) CNN from MONAI designed for medical image segmentation.
122+
* VNet is a larger (than SegResNet) CNN from MONAI designed for medical image segmentation.
123123
* TRAILMAP is our PyTorch implementation of a 3D CNN model trained for axonal detection in cleared tissue.
124-
* TRAILMAP-MS is our implementation in PyTorch additionally trained on mouse cortical neural nuclei from mesoSPIM data.
124+
* TRAILMAP_MS is our implementation in PyTorch additionally trained on mouse cortical neural nuclei from mesoSPIM data.
125125
* Note, the code is very modular, so it is relatively straightforward to use (and contribute) your model as well.
126-
126+
127127

128128
* The loss : for object detection in 3D volumes you'll likely want to use the Dice or Dice-focal Loss.
129129

File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
Lines changed: 6 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,6 @@
1+
#celleg3d custom model zoo:
2+
TRAILMAP_MS: http://deeplabcut.rowland.harvard.edu/models/DLC_human_fullbody_resnet_101.tar.gz
3+
SegResNet: http://deeplabcut.rowland.harvard.edu/models/DLC_human_fullbody_resnet_101.tar.gz
4+
VNet: http://deeplabcut.rowland.harvard.edu/models/DLC_human_fullbody_resnet_101.tar.gz
5+
6+
#todo: model weights should be updated for monai project once API is stable

0 commit comments

Comments
 (0)