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AlexsLemonade / OpenScPCA-nf Public

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Module for exporting openscpca annotations#172

Merged

allyhawkins merged 23 commits intomainAlexsLemonade/OpenScPCA-nf:mainfrom

allyhawkins/export-openscpca-annotationsAlexsLemonade/OpenScPCA-nf:allyhawkins/export-openscpca-annotationsCopy head branch name to clipboard

Sep 2, 2025

Conversation Commits23 (23)Checks Files changed

Merged

Module for exporting openscpca annotations#172
allyhawkins merged 23 commits intomainfrom
allyhawkins/export-openscpca-annotations

Commits

Commits on Aug 25, 2025

process and script for exporting json
allyhawkins
committed
add annotations bucket
allyhawkins
committed
format ewing output
allyhawkins
committed
include exporting in main workflow
allyhawkins
committed
add stub to export process
allyhawkins
committed
temp comment out other steps
allyhawkins
committed
date not data
allyhawkins
committed
make sure column names are strings
allyhawkins
committed

Commits on Aug 26, 2025

add readme
allyhawkins
committed
add some messages for debugging
allyhawkins
committed
directly export file
allyhawkins
committed
add annotations bucket to schema
allyhawkins
committed
simplify vector to remove nested lists
allyhawkins
committed

Commits on Aug 27, 2025

Apply suggestions from code review

allyhawkins
and
jashapiro
authored
Merge remote-tracking branch 'origin/main' into allyhawkins/export-openscpca-annotations
allyhawkins
committed
update comments to use annotation metadata
allyhawkins
committed
fix tuple setup for metadata
allyhawkins
committed
set stub annotations output
allyhawkins
committed
uncomment out other modules
allyhawkins
committed
update comment
allyhawkins
committed

Commits on Sep 2, 2025

Update comment

allyhawkins
and
jashapiro
authored
Merge remote-tracking branch 'origin/main' into allyhawkins/export-openscpca-annotations
allyhawkins
committed
remove duplicate infercnv module
allyhawkins
committed

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