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AlexsLemonade / OpenScPCA-nf Public

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Add module for running SCimilarity#175

Merged

allyhawkins merged 24 commits intomainAlexsLemonade/OpenScPCA-nf:mainfrom

allyhawkins/170-scimilarityAlexsLemonade/OpenScPCA-nf:allyhawkins/170-scimilarityCopy head branch name to clipboard

Aug 28, 2025

Conversation Commits24 (24)Checks Files changed

Merged

Add module for running SCimilarity#175
allyhawkins merged 24 commits intomainfrom
allyhawkins/170-scimilarity

Commits

Commits on Aug 26, 2025

set up parameters
allyhawkins
committed
add scimilarity workflow
allyhawkins
committed
add stub model
allyhawkins
committed
document module
allyhawkins
committed
set seed
allyhawkins
committed
temporarily remove other modules
allyhawkins
committed
specify python3
allyhawkins
committed
move scimilarity stub
allyhawkins
committed
use executable
allyhawkins
committed

Commits on Aug 27, 2025

Merge remote-tracking branch 'origin/main' into allyhawkins/170-scimilarity
allyhawkins
committed
reorganize stub model
allyhawkins
committed
more reorg
allyhawkins
committed
try to use /bin/bash
allyhawkins
committed
comment out some more modules
allyhawkins
committed
remove ./
allyhawkins
committed
Revert "try to use /bin/bash"
allyhawkins
committed
test out activating the environment
allyhawkins
committed
Revert "test out activating the environment"
allyhawkins
committed

Commits on Aug 28, 2025

Merge branch 'main' into allyhawkins/170-scimilarity
allyhawkins
authored
simplify output definition
allyhawkins
committed
remove extra space

allyhawkins
and
sjspielman
authored
add back other modules
allyhawkins
committed
add a todo for replacing with tagged links
allyhawkins
committed
Merge branch 'main' into allyhawkins/170-scimilarity
allyhawkins
authored

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