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Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 372 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 460 repositories
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer’s past year of commit activity
    TypeScript 0 Apache-2.0 353 0 0 Updated Dec 26, 2025
  • acq4 Public Forked from acq4/acq4

    Data acquisition for patch clamp ephys / optogenetics / imaging experiments

    AllenInstitute/acq4’s past year of commit activity
    Python 1 MIT 53 0 0 Updated Dec 25, 2025
  • ScientificSlideLibrary Public

    Scientific Slide Library landing page

    AllenInstitute/ScientificSlideLibrary’s past year of commit activity
    Python 0 0 0 0 Updated Dec 24, 2025
  • mermaid Public

    streamlit implementation of mermaid charts

    AllenInstitute/mermaid’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 24, 2025
  • CHARGE Public

    Cell HierARchy Gene Explorer (CHARGE) is an interactive tool for identifying genes of potential biological interest in a cell type taxonomy.

    AllenInstitute/CHARGE’s past year of commit activity
    R 0 0 0 0 Updated Dec 24, 2025
  • aibs-informatics-aws-utils Public

    Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team

    AllenInstitute/aibs-informatics-aws-utils’s past year of commit activity
    Python 1 0 2 1 Updated Dec 24, 2025
  • BG_Astrocyte_Multimodal Public
    AllenInstitute/BG_Astrocyte_Multimodal’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 23, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 30 9 271 9 Updated Dec 23, 2025
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 23, 2025
  • aind-smartspim-transform-utils Public Forked from AllenNeuralDynamics/aind-smartspim-transform-utils

    Package for transforming points between raw space and CCF space from the SmartSPIM light sheet pipeline

    AllenInstitute/aind-smartspim-transform-utils’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 23, 2025
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