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kaeldaikaeldai
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fixing 450glifs examples to work with nest 2.20
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7 files changed

+278
-10
lines changed

7 files changed

+278
-10
lines changed

‎docs/examples/point_450glifs/build_network.py‎

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Original file line numberDiff line numberDiff line change
@@ -13,35 +13,35 @@
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### 'model_template': 'nest:iaf_psc_alpha',
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'model_template': 'nest:glif_lif_asc_psc',
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### 'dynamics_params': '472363762_point.json'
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'dynamics_params': '476056333_glif_lif_asc_psc.json'
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'dynamics_params': '476056333_glif_lif_asc_config.json'
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},
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{
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'model_name': 'Rorb', 'ei': 'e',
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### 'model_template': 'nest:iaf_psc_alpha',
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'model_template': 'nest:glif_lif_asc_psc',
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### 'dynamics_params': '473863510_point.json'
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'dynamics_params': '480124551_glif_lif_asc_psc.json'
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'dynamics_params': '480124551_glif_lif_asc_config.json'
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},
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{
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'model_name': 'Nr5a1', 'ei': 'e',
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### 'model_template': 'nest:iaf_psc_alpha',
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'model_template': 'nest:glif_lif_asc_psc',
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###'dynamics_params': '473863035_point.json'
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'dynamics_params': '318808427_glif_lif_asc_psc.json'
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'dynamics_params': '318808427_glif_lif_asc_config.json'
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},
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{
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'model_name': 'PV1', 'ei': 'i',
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### 'model_template': 'nest:iaf_psc_alpha',
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'model_template': 'nest:glif_lif_asc_psc',
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### 'dynamics_params': '472912177_point.json'
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'dynamics_params': '478958894_glif_lif_asc_psc.json'
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'dynamics_params': '478958894_glif_lif_asc_config.json'
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},
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{
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'model_name': 'PV2', 'ei': 'i',
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### 'model_template': 'nest:iaf_psc_alpha',
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'model_template': 'nest:glif_lif_asc_psc',
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### 'dynamics_params': '473862421_point.json'
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'dynamics_params': '487667205_glif_lif_asc_psc.json'
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'dynamics_params': '487667205_glif_lif_asc_config.json'
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}
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]
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‎docs/examples/point_450glifs/network/internal_node_types.csv‎

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,8 +1,8 @@
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node_type_id ei model_template orig_model model_type dynamics_params model_name
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100 e nest:glif_lif_asc_psc glif point_process 593618144_glif_lif.json Scnn1a
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101 e nest:glif_lif_asc_psc glif point_process 480124551_glif_lif_asc_psc.json Rorb
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102 e nest:glif_lif_asc_psc glif point_process 318808427_glif_lif_asc_psc.json Nr5a1
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103 i nest:glif_lif_asc_psc glif point_process 478958894_glif_lif_asc_psc.json PV1
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104 i nest:glif_lif_asc_psc glif point_process 487667205_glif_lif_asc_psc.json PV2
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100 e nest:glif_lif_asc_psc glif point_process 593618144_glif_lif_asc_config.json Scnn1a
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101 e nest:glif_lif_asc_psc glif point_process 480124551_glif_lif_asc_config.json Rorb
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102 e nest:glif_lif_asc_psc glif point_process 318808427_glif_lif_asc_config.json Nr5a1
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103 i nest:glif_lif_asc_psc glif point_process 478958894_glif_lif_asc_config.json PV1
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104 i nest:glif_lif_asc_psc glif point_process 487667205_glif_lif_asc_config.json PV2
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105 e nest:iaf_psc_alpha intfire point_process IntFire1_exc_point.json LIF_exc
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106 i nest:iaf_psc_alpha intfire point_process IntFire1_inh_point.json LIF_inh

‎docs/examples/point_components/cell_models/318808427_glif_lif_asc_config.json‎

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{
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"El_reference": -0.0761691640218099,
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"C": 6.814035162092855e-11,
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"asc_amp_array": [
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-1.3008896216519995e-11,
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-2.0000774015506742e-10
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],
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"init_threshold": 0.028931326614574898,
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"threshold_reset_method": {
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"params": {},
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"name": "inf"
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},
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"th_inf": 0.028931326614574898,
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"spike_cut_length": 48,
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"init_AScurrents": [
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0.0,
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0.0
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],
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"init_voltage": 0.0,
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"threshold_dynamics_method": {
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"params": {},
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"name": "inf"
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},
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"voltage_reset_method": {
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"params": {},
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"name": "zero"
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},
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"extrapolation_method_name": "endpoints",
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"dt": 5e-05,
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"voltage_dynamics_method": {
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"params": {},
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"name": "linear_forward_euler"
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},
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"El": 0.0,
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"asc_tau_array": [
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0.3333333333333333,
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0.01
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],
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"R_input": 253923530.49592742,
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"AScurrent_dynamics_method": {
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"params": {},
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"name": "exp"
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},
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"AScurrent_reset_method": {
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"params": {
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"r": [
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1.0,
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1.0
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]
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},
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"name": "sum"
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},
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"dt_multiplier": 10,
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"th_adapt": null,
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"coeffs": {
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"a": 1,
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"C": 1,
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"b": 1,
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"G": 1,
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"th_inf": 1.2196716966697445,
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"asc_amp_array": [
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1.0,
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1.0
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]
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},
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"type": "GLIF"
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}

‎docs/examples/point_components/cell_models/478958894_glif_lif_asc_config.json‎

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{
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"El_reference": -0.070459508895874,
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"C": 8.121058405283176e-11,
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"asc_amp_array": [
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-4.081827290436436e-12,
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-2.919766820899364e-10
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],
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"init_threshold": 0.025547322067076265,
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"threshold_reset_method": {
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"params": {},
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"name": "inf"
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},
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"th_inf": 0.025547322067076265,
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"spike_cut_length": 30,
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"init_AScurrents": [
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0.0,
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0.0
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],
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"init_voltage": 0.0,
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"threshold_dynamics_method": {
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"params": {},
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"name": "inf"
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},
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"voltage_reset_method": {
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"params": {},
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"name": "zero"
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},
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"extrapolation_method_name": "endpoints",
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"dt": 5e-05,
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"voltage_dynamics_method": {
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"params": {},
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"name": "linear_forward_euler"
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},
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"El": 0.0,
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"asc_tau_array": [
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0.3333333333333333,
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0.0033333333333333335
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],
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"R_input": 108752037.62601678,
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"AScurrent_dynamics_method": {
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"params": {},
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"name": "exp"
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},
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"AScurrent_reset_method": {
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"params": {
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"r": [
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1.0,
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1.0
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]
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},
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"name": "sum"
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},
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"dt_multiplier": 10,
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"th_adapt": null,
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"coeffs": {
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"a": 1,
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"C": 1,
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"b": 1,
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"G": 1,
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"th_inf": 1.0266432300466106,
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"asc_amp_array": [
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1.0,
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1.0
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]
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},
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"type": "GLIF"
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}

‎docs/examples/point_components/cell_models/480124551_glif_lif_asc_config.json‎

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{
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"El_reference": -0.07330062357584632,
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"C": 5.2353697808027724e-11,
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"asc_amp_array": [
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-1.017435274498811e-11,
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-1.195388378783246e-10
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],
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"init_threshold": 0.025054426480123265,
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"threshold_reset_method": {
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"params": {},
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"name": "inf"
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},
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"th_inf": 0.025054426480123265,
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"spike_cut_length": 64,
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"init_AScurrents": [
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0.0,
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0.0
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],
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"init_voltage": 0.0,
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"threshold_dynamics_method": {
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"params": {},
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"name": "inf"
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},
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"voltage_reset_method": {
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"params": {},
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"name": "zero"
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},
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"extrapolation_method_name": "endpoints",
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"dt": 5e-05,
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"voltage_dynamics_method": {
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"params": {},
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"name": "linear_forward_euler"
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},
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"El": 0.0,
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"asc_tau_array": [
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0.3333333333333333,
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0.01
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],
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"R_input": 146064625.9512843,
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"AScurrent_dynamics_method": {
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"params": {},
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"name": "exp"
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},
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"AScurrent_reset_method": {
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"params": {
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"r": [
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1.0,
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1.0
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]
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},
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"name": "sum"
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},
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"dt_multiplier": 10,
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"th_adapt": null,
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"coeffs": {
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"a": 1,
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"C": 1,
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"b": 1,
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"G": 1,
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"th_inf": 1.4257861156030993,
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"asc_amp_array": [
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1.0,
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1.0
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]
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},
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"type": "GLIF"
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}

‎docs/examples/point_components/cell_models/487667205_glif_lif_asc_config.json‎

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{
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"El_reference": -0.07208961296081545,
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"C": 6.402349624649017e-11,
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"asc_amp_array": [
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-3.28747057261021e-12,
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6.38063564461854e-11
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],
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"init_threshold": 0.025262707903637396,
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"threshold_reset_method": {
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"params": {},
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"name": "inf"
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},
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"th_inf": 0.025262707903637396,
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"spike_cut_length": 28,
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"init_AScurrents": [
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0.0,
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0.0
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],
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"init_voltage": 0.0,
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"threshold_dynamics_method": {
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"params": {},
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"name": "inf"
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},
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"voltage_reset_method": {
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"params": {},
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"name": "zero"
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},
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"extrapolation_method_name": "endpoints",
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"dt": 5e-05,
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"voltage_dynamics_method": {
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"params": {},
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"name": "linear_forward_euler"
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},
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"El": 0.0,
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"asc_tau_array": [
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0.3333333333333333,
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0.0033333333333333335
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],
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"R_input": 131640693.62147184,
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"AScurrent_dynamics_method": {
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"params": {},
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"name": "exp"
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},
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"AScurrent_reset_method": {
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"params": {
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"r": [
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1.0,
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1.0
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]
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},
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"name": "sum"
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},
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"dt_multiplier": 10,
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"th_adapt": null,
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"coeffs": {
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"a": 1,
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"C": 1,
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"b": 1,
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"G": 1,
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"th_inf": 1.0409108559897018,
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"asc_amp_array": [
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1.0,
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1.0
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]
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},
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"type": "GLIF"
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}

‎docs/examples/point_components/cell_models/593618144_glif_lif_asc.json‎ renamed to ‎docs/examples/point_components/cell_models/593618144_glif_lif_asc_config.json‎

File renamed without changes.

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