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README.md

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GraphTrace is a Python library that leverages machine learning to automatically correct splits in fragmented neuron segmentations from whole-brain images. A demo Jupyter notebook is provided to showcase the process: it loads fragmented neuron segments from a predicted segmentation and corrects them using GraphTrace. You can also use the provided code to train a deep learning model and evaluate it against ground truth data.
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<p>
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<img src="imgs/result.png" width="900" alt="Example of before and after run obtained with GraphTrace">
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<img src="imgs/result.png" width="900" alt="">
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<b> Figure: </b>Split correction result obtained with GraphTrace
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</p>
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Briefly describe inference pipeline, to do...
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- Graph Update: Integrates inference results by merging fragments corresponding to an accepted proposal.
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<p align="center">
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<img src="imgs/pipeline.png" width="700" alt="Visualization of split correction pipeline. See Inference section for description of each step.">
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<img src="imgs/pipeline.png" width="700" alt="pipeline">
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<br>
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<b> Figure: </b>Visualization of split correction pipeline. See Inference section for description of each step.
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</p>
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## Inference

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