Convert to use uv

Author: gouwens

.python-version

@@ -0,0 +1 @@
+3.9

neuron_morphology/__init__.py

@@ -0,0 +1,32 @@
+[project]
+name = "neuron-morphology"
+version = "1.2.2"
+description = "Add your description here"
+readme = "README.md"
+authors = [
+    { name = "Nathan Gouwens", email = "nathang@alleninstitute.org" }
+]
+requires-python = ">=3.9"
+dependencies = [
+    "argschema>=3.0.4",
+    "boto3>=1.12.42",
+    "cloud-files>=6.1.1",
+    "glymur>=0.14.0.post1",
+    "imageio>=2.37.2",
+    "matplotlib>=3.9.4",
+    "numpy>=1.14.2",
+    "pandas>=2.3.3",
+    "pg8000>=1.31.5",
+    "pillow>=11.3.0",
+    "rasterio>=1.4.3",
+    "scikit-image>0.17",
+    "scipy>=1.0.0",
+    "shapely>=2.0.7",
+    "simplejson>=3.20.2",
+    "six>=1.17.0",
+    "tables>=3.8",
+]
+
+[build-system]
+requires = ["uv_build>=0.9.26,<0.10.0"]
+build-backend = "uv_build"

pyproject.toml

@@ -4,13 +4,15 @@ pandas
 numpy>=1.14.2
 scipy>=1.0.0
 six
-allensdk
 argschema
-glymur<1.0.0 # If you want to actually use glymur, you must also have openjpeg installed. The easiest way is "conda install openjpeg"
-shapely<2.0.0
-imageio<3.0.0
-pg8000<2.0.0 # required for running from the Allen Institute's internal database
+glymur
+shapely
+imageio
+pg8000 # required for running from the Allen Institute's internal database
 boto3>=1.12.42
 cloud-files
 scikit-image>0.17
 tables>=3.8
+simplejson
+rasterio
+

requirements.txt

@@ -0,0 +1,18 @@
+# -*- coding: utf-8 -*-
+
+"""Top-level package for neuron_morphology."""
+
+import os
+from logging.config import fileConfig
+from importlib.metadata import version, PackageNotFoundError
+
+try:
+    __version__ = version("neuron_morphology")
+except PackageNotFoundError:
+    # package is not installed
+    __version__ = "uninstalled"
+
+fileConfig(os.path.join(
+    os.path.dirname(__file__),
+    'logging_config.ini')
+)