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Remove broken submodule FIP_DAQ_Control
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‎src/Platforms/FIP_DAQ_Control‎

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‎src/Platforms/FIP_DAQ_Control/.config/dotnet-tools.json‎

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{
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"version": 1,
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"isRoot": true,
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"tools": {
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"bonsai.sgen": {
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"version": "0.6.1",
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"commands": [
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"bonsai.sgen"
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]
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}
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}
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}

‎src/Platforms/FIP_DAQ_Control/.gitattributes‎

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* text=auto
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*.cmd text eol=crlf
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*.bat text eol=crlf
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*.bonsai text

‎src/Platforms/FIP_DAQ_Control/.github/workflows/aind-physio-fip.yml‎

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name: FIP test suite
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on:
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workflow_dispatch:
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inputs:
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bump_type:
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description: "Version bump type"
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required: false
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default: "rc"
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type: choice
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options:
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- rc
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- patch
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- minor
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- major
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- stable
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pull_request:
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push:
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branches:
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- main
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- dev*
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- release*
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release:
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types: [published]
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jobs:
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# ╔──────────────────────────╗
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# │ _____ _ │
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# │ |_ _|__ ___| |_ ___ │
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# │ | |/ _ \/ __| __/ __| │
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# │ | | __/\__ \ |_\__ \ │
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# │ |_|\___||___/\__|___/ │
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# │ │
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# ╚──────────────────────────╝
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tests:
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runs-on: windows-latest
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name: FIP unit tests
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steps:
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- uses: actions/checkout@v5
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- uses: astral-sh/setup-uv@v6
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with:
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enable-cache: true
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- name: Install python dependencies
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run: uv sync
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- name: Run ruff format
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run: uv run ruff format
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- name: Run ruff check
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run: uv run ruff check
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- name: Run codespell
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run: uv run codespell
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- name: Setup .NET Core SDK
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uses: actions/setup-dotnet@v4
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with:
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dotnet-version: 8.x
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- name: Restore dotnet tools
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run: dotnet tool restore
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- name: Setup Bonsai environment
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working-directory: ./bonsai
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run: ./setup.ps1
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- name: Run python unit tests
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run: uv run python -m unittest
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- name: Regenerate schemas
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run: uv run fip regenerate
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- name: Check for uncommitted changes
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run: |
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git config --global core.safecrlf false
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git diff --exit-code || (echo "Untracked changes found" && exit 1)
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# ╔───────────────────────────────────────────────────────────╗
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# │ ____ ___ ____ ____ ____ _ │
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# │ / ___|_ _/ ___| _ \ | _ \ ___| | ___ __ _ ___ ___ │
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# │ | | | | | | | | | | |_) / _ \ |/ _ \/ _` / __|/ _ \ │
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# │ | |___ | | |___| |_| | | _ < __/ | __/ (_| \__ \ __/ │
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# │ \____|___\____|____/ |_| \_\___|_|\___|\__,_|___/\___| │
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# │ │
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# ╚───────────────────────────────────────────────────────────╝
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github-rc-release:
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needs: tests
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runs-on: windows-latest
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if: >
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github.ref == 'refs/heads/main' &&
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github.event_name == 'push' &&
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github.event.head_commit.author.email != 'github-actions[bot]@users.noreply.github.com'
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name: Create GitHub pre-release
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steps:
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- uses: actions/checkout@v5
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with:
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fetch-depth: 0
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ref: main
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- uses: astral-sh/setup-uv@v6
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with:
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enable-cache: true
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- name: Bump pre-release by default
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# Note: Bumping the rc will fail if the version is not currently an rc
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# To solve it, we bump the patch and rc atomically
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shell: bash # interop with win/linux for if statement
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run: |
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if uv version --bump rc --dry-run; then
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uv version --bump rc
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else
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uv version --bump rc --bump patch
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fi
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- name: Regenerate schemas
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run: uv run fip regenerate
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- name: Regenerate examples
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run: uv run ./examples/example.py --path-seed "./examples/{schema}.json"
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- name: Commit version and schema changes
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run: |
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git config --global user.name "github-actions[bot]"
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git config --global user.email "github-actions[bot]@users.noreply.github.com"
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git add .
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git commit -m "Bump version and regenerate schemas [skip ci]" || echo "No changes to commit"
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git push origin main
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- name: Get version
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id: get_version
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shell: bash
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run: |
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version=$(uv version --short)
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echo "version=$version" >> $GITHUB_OUTPUT
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- name: Create GitHub Release
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uses: softprops/action-gh-release@v2
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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with:
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tag_name: v${{ steps.get_version.outputs.version }}
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name: v${{ steps.get_version.outputs.version }}
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generate_release_notes: true
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prerelease: true
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body: |
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Automated pre-release v${{ steps.get_version.outputs.version }}
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# ╔─────────────────────────────────────────────────────────────────╗
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# │ ____ _ _ _ ____ _ │
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# │ | _ \ _ _| |__ | (_) ___ | _ \ ___| | ___ __ _ ___ ___ │
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# │ | |_) | | | | '_ \| | |/ __| | |_) / _ \ |/ _ \/ _` / __|/ _ \ │
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# │ | __/| |_| | |_) | | | (__ | _ < __/ | __/ (_| \__ \ __/ │
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# │ |_| \__,_|_.__/|_|_|\___| |_| \_\___|_|\___|\__,_|___/\___| │
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# │ │
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# ╚─────────────────────────────────────────────────────────────────╝
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prepare-public-release:
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runs-on: windows-latest
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name: Prepare files for public release
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needs: tests
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if: github.event_name == 'workflow_dispatch'
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outputs:
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version: ${{ steps.get_version.outputs.version }}
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is_prerelease: ${{ steps.check_prerelease.outputs.prerelease }}
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steps:
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- uses: actions/checkout@v5
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with:
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fetch-depth: 0
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ref: main
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- uses: astral-sh/setup-uv@v6
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with:
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enable-cache: true
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- name: Get target version
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id: get_version
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shell: bash
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run: |
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# Use bump type from input (defaults to rc)
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bump_type="${{ github.event.inputs.bump_type || 'rc' }}"
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echo "Bumping version with type: $bump_type"
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# Handle version bumping based on type
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if [[ "$bump_type" == "rc" ]]; then
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# Handle rc bumping logic (same as in github-rc-release)
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if uv version --bump rc --dry-run; then
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uv version --bump rc
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else
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uv version --bump rc --bump patch
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fi
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else
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# Handle patch, minor, major, stable
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uv version --bump $bump_type
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fi
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release_version=$(uv run uv version --short)
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echo "version=$release_version" >> $GITHUB_OUTPUT
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echo "Release version will be: $release_version"
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- name: Validate version format
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run: uv version ${{ steps.get_version.outputs.version }} --dry-run
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- name: Update package version
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run: uv version ${{ steps.get_version.outputs.version }}
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- name: Regenerate schemas
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run: uv run fip regenerate
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- name: Regenerate examples
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run: uv run ./examples/example.py --path-seed "./examples/{schema}.json"
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- name: Commit version, schema changes and create tag
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run: |
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git config --global user.name "github-actions[bot]"
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git config --global user.email "github-actions[bot]@users.noreply.github.com"
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git add .
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git commit -m "v${{ steps.get_version.outputs.version }} [skip ci]"
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git tag -a "v${{ steps.get_version.outputs.version }}" -m "Release v${{ steps.get_version.outputs.version }}"
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git push origin main
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git push origin "v${{ steps.get_version.outputs.version }}"
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- name: Determine if prerelease
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id: check_prerelease
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shell: bash
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run: |
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version="${{ steps.get_version.outputs.version }}"
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if [[ "$version" == *"rc"* ]]; then
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echo "prerelease=true" >> $GITHUB_OUTPUT
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else
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echo "prerelease=false" >> $GITHUB_OUTPUT
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fi
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- name: Create GitHub Release
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uses: softprops/action-gh-release@v2
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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with:
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tag_name: v${{ steps.get_version.outputs.version }}
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name: Release v${{ steps.get_version.outputs.version }}
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generate_release_notes: true
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prerelease: ${{ steps.check_prerelease.outputs.prerelease }}
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body: |
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Release v${{ steps.get_version.outputs.version }}
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This release was manually triggered.
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publish-to-pypi:
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runs-on: windows-latest
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name: Publish to PyPI
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needs: [tests, prepare-public-release]
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if: |
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(github.event_name == 'workflow_dispatch') ||
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(github.event_name == 'release' &&
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github.event.action == 'published' &&
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!github.event.release.prerelease &&
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startsWith(github.ref, 'refs/tags/v'))
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steps:
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- uses: actions/checkout@v5
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with:
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fetch-depth: 0
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ref: ${{ github.event_name == 'workflow_dispatch' && 'main' || github.ref_name }}
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- uses: astral-sh/setup-uv@v6
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with:
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enable-cache: true
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- name: Verify version consistency (for automatic releases)
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if: github.event_name == 'release'
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shell: bash
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run: |
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tag_version=$(echo "${{ github.ref_name }}" | sed 's/^v//')
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package_version=$(uv run uv version --short)
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if [[ "$tag_version" != "$package_version" ]]; then
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echo "ERROR: Tag version ($tag_version) doesn't match package version ($package_version)"
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exit 1
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fi
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echo "✅ Version consistency verified: $tag_version"
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- name: Get current version (for manual releases)
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if: github.event_name == 'workflow_dispatch'
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shell: bash
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run: |
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package_version=$(uv run uv version --short)
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echo "📦 Publishing version: $package_version"
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- name: Build
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run: uv build
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- name: Publish to PyPI
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run: uv publish --token ${{ secrets.AIND_PYPI_TOKEN }}
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# ╔─────────────────────────╗
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# │ ____ │
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# │ | _ \ ___ ___ ___ │
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# │ | | | |/ _ \ / __/ __| │
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# │ | |_| | (_) | (__\__ \ │
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# │ |____/ \___/ \___|___/ │
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# │ │
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# ╚─────────────────────────╝
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build-docs:
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name: Build and deploy documentation to GitHub Pages
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runs-on: ubuntu-latest
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needs: publish-to-pypi
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steps:
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- name: Checkout repository
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uses: actions/checkout@v5
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- name: Install uv
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uses: astral-sh/setup-uv@v3
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- name: Setup Graphviz
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uses: ts-graphviz/setup-graphviz@v2
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- name: Install docs group of dependencies
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run: uv sync --group docs
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- name: Build Sphinx documentation
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run: uv run sphinx-build -b html docs/ _build/html
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- name: Deploy to GitHub Pages
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uses: peaceiris/actions-gh-pages@v4
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with:
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github_token: ${{ secrets.GITHUB_TOKEN }}
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publish_dir: _build/html
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force_orphan: true

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