Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 8
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- aind-dynamic-foraging-data-utils Public
Tools for the analysis of behavior and neural data from the dynamic foraging task
AllenNeuralDynamics/aind-dynamic-foraging-data-utils’s past year of commit activity - aind-torch-utils Public
Generic, queue-based, multi-GPU PyTorch inference pipeline for large volumetric (3D or 5D T,C,Z,Y,X) data.
AllenNeuralDynamics/aind-torch-utils’s past year of commit activity - openscope-community-predictive-processing Public
This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
AllenNeuralDynamics/openscope-community-predictive-processing’s past year of commit activity - aind-z1-camera-alignment Public
Code to align spectrally adjacent channels in Zeiss Lightsheet 7 (Z1) datasets
AllenNeuralDynamics/aind-z1-camera-alignment’s past year of commit activity - aind-dynamic-foraging-basic-analysis Public
compute behavioral metrics and generate basic plottings for the dynamic foraging task
AllenNeuralDynamics/aind-dynamic-foraging-basic-analysis’s past year of commit activity