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    478 repositories

    • aind-metadata-extractor

      Public
      Metadata extractors for AIND
      Python
      •
      MIT License
      •0•0•2•5•Updated Sep 17, 2025Sep 17, 2025

    • ophys-slap2-analysis

      Public
      Data reduction, preprocessing, and analysis for SLAP2 microscopes
      Jupyter Notebook
      •1•3•2•2•Updated Sep 17, 2025Sep 17, 2025

    • FIP_DAQ_Control

      Public
      C++
      •
      MIT License
      •0•0•4•2•Updated Sep 17, 2025Sep 17, 2025

    • aind-data-access-api

      Public
      Library to interface with AIND databases
      aind-core-servicesaind-data-infrastructure
      Python
      •
      MIT License
      •0•2•8•1•Updated Sep 17, 2025Sep 17, 2025

    • package-brain-atlas-assets

      Public
      Reorganize various brain atlas data assets into a standard organization and metadata convention.
      Python
      •
      MIT License
      •0•0•2•1•Updated Sep 17, 2025Sep 17, 2025

    • harp.device.quad-dac

      Public
      This repository contains the hardware, firmware, and software related to the Harp quad DAC
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • LCNE-patchseq-analysis

      Public
      Library for analyzing patch-seq data from LC-NE
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • aind-dynamic-foraging-data-utils

      Public
      Tools for the analysis of behavior and neural data from the dynamic foraging task
      Python
      •
      MIT License
      •0•2•18•0•Updated Sep 17, 2025Sep 17, 2025

    • voxel

      Public
      General purpose microscope control repository
      Python
      •
      MIT License
      •4•4•9•0•Updated Sep 16, 2025Sep 16, 2025

    • aind-hcr-data-loader

      Public
      Data loading for AIND HCR datasets (v1.0)
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Sep 16, 2025Sep 16, 2025

    • gamer-x

      Public
      Python
      •
      MIT License
      •0•1•2•0•Updated Sep 16, 2025Sep 16, 2025

    • openscope-community-predictive-processing

      Public
      This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
      Python
      •
      MIT License
      •12•12•31•1•Updated Sep 16, 2025Sep 16, 2025

    • dataverse-client

      Public
      Python
      •
      MIT License
      •0•0•1•3•Updated Sep 16, 2025Sep 16, 2025

    • aind-metadata-service

      Public
      Service to retrieve Labtracks/Sharepoint info using a REST API
      aind-data-infrastructure
      Python
      •
      MIT License
      •1•3•12•0•Updated Sep 16, 2025Sep 16, 2025

    • galen-uv-workflows

      Public
      Workflows using uv and commitizen to ci, tag, and publish python projects
      MIT License
      •2•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • ibl-ephys-alignment-gui

      Public
      Tool for aligning electrophysiological features to anatomical landmarks
      Python
      •
      MIT License
      •17•8•0•0•Updated Sep 16, 2025Sep 16, 2025

    • clabe

      Public
      Command-line-interface Launcher for AIND Behavior Experiments
      aind-behavior
      Python
      •
      MIT License
      •0•0•9•1•Updated Sep 16, 2025Sep 16, 2025

    • Aind.Behavior.VrForaging

      Public
      Task implemention of VR Foraging experiment
      aind-behavior
      C#
      •
      MIT License
      •0•3•10•1•Updated Sep 16, 2025Sep 16, 2025

    • aind-codeocean-pipeline-monitor

      Public
      Package to manage monitoring a Code Ocean pipeline
      aind-data-infrastructure
      Python
      •
      MIT License
      •0•1•1•0•Updated Sep 16, 2025Sep 16, 2025

    • exaspim-control

      Public
      Python
      •
      MIT License
      •2•1•0•0•Updated Sep 16, 2025Sep 16, 2025

    • aind-fip-dff

      Public
      This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
      Python
      •
      MIT License
      •0•0•5•2•Updated Sep 16, 2025Sep 16, 2025

    • aind-ephys-visualization

      Public
      CodeOcean capsule for ephys visualization
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • aind-ephys-curation

      Public
      Code Ocean capsule for ephys curation
      Python
      •
      MIT License
      •1•1•0•0•Updated Sep 16, 2025Sep 16, 2025

    • aind-data-schema

      Public
      A library that defines AIND data schema and validates JSON.
      aind-core-services
      Python
      •
      MIT License
      •17•26•28•3•Updated Sep 16, 2025Sep 16, 2025

    • aind-data-schema-models

      Public
      Data models used in aind-data-schema
      Python
      •
      MIT License
      •3•0•8•2•Updated Sep 16, 2025Sep 16, 2025

    • aind-ephys-postprocessing

      Public
      CodeOcean capsule for ephys post-processing
      Python
      •
      MIT License
      •2•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • aind-ephys-spikesort-kilosort4

      Public
      CodeOcean capsule for ephys spike sorting with Kilosort4
      Python
      •
      MIT License
      •0•3•0•0•Updated Sep 16, 2025Sep 16, 2025

    • aind-behavior-camstim-pipeline

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2025Sep 16, 2025

    • dynamic-foraging-task

      Public
      Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
      Python
      •
      MIT License
      •5•5•26•9•Updated Sep 16, 2025Sep 16, 2025

    • aind-ephys-pipeline

      Public
      AIND pipeline for processing extracellular electrophysiology data
      Nextflow
      •
      MIT License
      •6•13•4•0•Updated Sep 16, 2025Sep 16, 2025