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fixing invalid project_names
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4 files changed

+5
-5
lines changed

4 files changed

+5
-5
lines changed

src/aind_data_schema/schema_upgrade/data_description_upgrade.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -158,7 +158,7 @@ def upgrade_data_description(self, **kwargs) -> DataDescription:
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data_level=self._get_or_default(self.old_data_description_model, "data_level", kwargs),
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group=self._get_or_default(self.old_data_description_model, "group", kwargs),
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investigators=self._get_or_default(self.old_data_description_model, "investigators", kwargs),
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project_name=self._get_or_default(self.old_data_description_model, "projectname", kwargs),
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project_name=self._get_or_default(self.old_data_description_model, "project_name", kwargs),
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restrictions=self._get_or_default(self.old_data_description_model, "restrictions", kwargs),
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modality=modality,
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platform=platform,

tests/resources/ephys_data_description/data_description_0.6.2.json

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -33,7 +33,7 @@
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"ror_id": "04szwah67",
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"data_level": "raw",
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"group": "ephys",
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"project_name": "MRI-Guided Elecrophysiology",
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"project_name": "mri-guided-electrophysiology",
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"experiment_type": "ecephys",
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"subject_id": "661279",
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"data_summary": "This dataset was collected to evaluate the accuracy and feasibility of the AIND MRI-guided insertion pipeline. One probe targets the retinotopic center of LGN, with drifting grating for receptive field mapping to evaluate targeting. Other targets can be evaluated in histology."

tests/resources/ephys_data_description/data_description_0.6.2_wrong_field.json

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -33,7 +33,7 @@
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"ror_id": "04szwah67",
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"data_level": "raw",
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"group": "ephys",
36-
"project_name": "MRI-Guided Elecrophysiology",
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"project_name": "mri-guided-electrophysiology",
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"experiment_type": "ecephys",
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"subject_id": "661279",
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"data_summary": "This dataset was collected to evaluate the accuracy and feasibility of the AIND MRI-guided insertion pipeline. One probe targets the retinotopic center of LGN, with drifting grating for receptive field mapping to evaluate targeting. Other targets can be evaluated in histology."

tests/test_schema_upgrade.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -132,7 +132,7 @@ def test_upgrades_0_6_2(self):
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self.assertEqual(DataLevel.RAW, new_data_description.data_level)
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self.assertEqual(Group.EPHYS, new_data_description.group)
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self.assertEqual(["John Doe", "Mary Smith"], new_data_description.investigators)
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# self.assertEqual("MRI-Guided Elecrophysiology", new_data_description.project_name)
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self.assertEqual("mri-guided-electrophysiology", new_data_description.project_name)
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self.assertIsNone(new_data_description.restrictions)
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self.assertEqual([Modality.ECEPHYS], new_data_description.modality)
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self.assertEqual("661279", new_data_description.subject_id)
@@ -192,7 +192,7 @@ def test_upgrades_0_6_2_wrong_field(self):
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self.assertEqual(DataLevel.RAW, new_data_description.data_level)
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self.assertEqual(Group.EPHYS, new_data_description.group)
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self.assertEqual(["John Doe", "Mary Smith"], new_data_description.investigators)
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# self.assertEqual("MRI-Guided Elecrophysiology", new_data_description.project_name)
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self.assertEqual("mri-guided-electrophysiology", new_data_description.project_name)
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self.assertIsNone(new_data_description.restrictions)
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self.assertEqual([Modality.ECEPHYS], new_data_description.modality)
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self.assertEqual("661279", new_data_description.subject_id)

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