Merge branch 'main' into feat-787-MRI-updates

Author: Sun-flow

examples/aibs_smartspim_instrument.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
-   "schema_version": "0.10.12",
+   "schema_version": "0.10.13",
    "instrument_id": "SmartSPIM2-2",
    "modification_date": "2023-10-04",
    "instrument_type": "SmartSPIM",

examples/aibs_smartspim_procedures.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
-   "schema_version": "0.12.5",
+   "schema_version": "0.12.6",
    "subject_id": "651286",
    "subject_procedures": [
       {

examples/aind_smartspim_instrument.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
-   "schema_version": "0.10.12",
+   "schema_version": "0.10.13",
    "instrument_id": "SmartSPIM2-1",
    "modification_date": "2023-10-04",
    "instrument_type": "SmartSPIM",

examples/bergamo_ophys_session.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
-   "schema_version": "0.1.8",
+   "schema_version": "0.1.9",
    "protocol_id": [],
    "experimenter_full_name": [
       "John Doe"
@@ -65,7 +65,13 @@
                "fov_scale_factor_unit": "um/pixel",
                "frame_rate": "20",
                "frame_rate_unit": "hertz",
-               "coupled_fov_index": null
+               "coupled_fov_index": null,
+               "power": null,
+               "power_unit": "percent",
+               "scanfield_z": null,
+               "scanfield_z_unit": "micrometer",
+               "scanimage_roi_index": null,
+               "notes": null
             }
          ],
          "slap_fovs": null,

examples/ephys_rig.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
-   "schema_version": "0.2.17",
+   "schema_version": "0.2.18",
    "rig_id": "323_EPHYS1",
    "modification_date": "2023-10-03",
    "mouse_platform": {

examples/ephys_session.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
-   "schema_version": "0.1.8",
+   "schema_version": "0.1.9",
    "protocol_id": [],
    "experimenter_full_name": [
       "Jane Doe"

examples/exaspim_acquisition.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/acquisition.py",
-   "schema_version": "0.6.8",
+   "schema_version": "0.6.9",
    "protocol_id": [],
    "experimenter_full_name": [
       "###"

examples/exaspim_acquisition.py

@@ -48,7 +48,10 @@
     session_end_time=t,
     local_storage_directory="D:",
     external_storage_directory="Z:",
-    chamber_immersion=acquisition.Immersion(medium="PBS", refractive_index=1.33),
+    chamber_immersion=acquisition.Immersion(
+        medium="PBS",
+        refractive_index=1.33,
+    ),
     axes=[
         ImageAxis(
             name="X",

examples/exaspim_instrument.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
-   "schema_version": "0.10.12",
+   "schema_version": "0.10.13",
    "instrument_id": "exaSPIM1-1",
    "modification_date": "2023-10-04",
    "instrument_type": "exaSPIM",

examples/fip_ophys_rig.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
-   "schema_version": "0.2.17",
+   "schema_version": "0.2.18",
    "rig_id": "428_FIP1_2",
    "modification_date": "2023-10-03",
    "mouse_platform": {