immersion medium

Author: saskiad

examples/exaspim_acquisition.json

@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/imaging/acquisition.py",
-   "schema_version": "0.5.3",
+   "schema_version": "0.5.4",
    "experimenter_full_name": [
       "###"
    ],

src/aind_data_schema/device.py

@@ -244,6 +244,7 @@ class Immersion(Enum):
     AIR = "air"
     MULTI = "multi"
     OIL = "oil"
+    PBS = "PBS"
     WATER = "water"
     OTHER = "other"
 

src/aind_data_schema/imaging/acquisition.py

@@ -10,7 +10,7 @@
 from pydantic import Field
 
 from aind_data_schema.base import AindCoreModel, AindModel, EnumSubset
-from aind_data_schema.device import Calibration, Maintenance
+from aind_data_schema.device import Calibration, Immersion, Maintenance
 from aind_data_schema.imaging.tile import AcquisitionTile
 from aind_data_schema.processing import ProcessName
 from aind_data_schema.utils.units import SizeUnit
@@ -76,7 +76,7 @@ def from_direction_code(code) -> List[Axis]:
 class Immersion(AindModel):
     """Description of immersion media"""
 
-    medium: str = Field(..., title="Immersion medium")
+    medium: Immersion = Field(..., title="Immersion medium")
     refractive_index: Decimal = Field(..., title="Index of refraction")
 
 
@@ -102,7 +102,7 @@ class ProcessingSteps(AindModel):
 class Acquisition(AindCoreModel):
     """Description of an imaging acquisition session"""
 
-    schema_version: str = Field("0.5.3", description="schema version", title="Version", const=True)
+    schema_version: str = Field("0.5.4", description="schema version", title="Version", const=True)
     experimenter_full_name: List[str] = Field(
         ...,
         description="First and last name of the experimenter(s).",