Merge pull request #1029 from AllenNeuralDynamics/release-v1.0.0

jtyoung84 · web-flow · commit 687b7a3c4aa5 · 2024-08-20T10:34:04.000-07:00
Release v1.0.0
diff --git a/examples/aibs_smartspim_instrument.json b/examples/aibs_smartspim_instrument.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
-   "schema_version": "0.10.29",
+   "schema_version": "1.0.0",
    "instrument_id": "440_SmartSPIM2_20231004",
    "modification_date": "2023-10-04",
    "instrument_type": "SmartSPIM",
diff --git a/examples/aibs_smartspim_procedures.json b/examples/aibs_smartspim_procedures.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
-   "schema_version": "0.13.15",
+   "schema_version": "1.0.0",
    "subject_id": "651286",
    "subject_procedures": [
       {
diff --git a/examples/aind_smartspim_instrument.json b/examples/aind_smartspim_instrument.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
-   "schema_version": "0.10.29",
+   "schema_version": "1.0.0",
    "instrument_id": "440_SmartSPIM1_20231004",
    "modification_date": "2023-10-04",
    "instrument_type": "SmartSPIM",
diff --git a/examples/bergamo_ophys_session.json b/examples/bergamo_ophys_session.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
-   "schema_version": "0.3.5",
+   "schema_version": "1.0.0",
    "protocol_id": [],
    "experimenter_full_name": [
       "John Doe"
diff --git a/examples/data_description.json b/examples/data_description.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/data_description.py",
-   "schema_version": "0.13.12",
+   "schema_version": "1.0.0",
    "license": "CC-BY-4.0",
    "platform": {
       "name": "Electrophysiology platform",
diff --git a/examples/ephys_rig.json b/examples/ephys_rig.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
-   "schema_version": "0.5.5",
+   "schema_version": "1.0.0",
    "rig_id": "323_EPHYS1_20231003",
    "modification_date": "2023-10-03",
    "mouse_platform": {
diff --git a/examples/ephys_session.json b/examples/ephys_session.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
-   "schema_version": "0.3.5",
+   "schema_version": "1.0.0",
    "protocol_id": [],
    "experimenter_full_name": [
       "Max Quibble",
diff --git a/examples/exaspim_acquisition.json b/examples/exaspim_acquisition.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/acquisition.py",
-   "schema_version": "0.6.21",
+   "schema_version": "1.0.0",
    "protocol_id": [],
    "experimenter_full_name": [
       "###"
diff --git a/examples/exaspim_instrument.json b/examples/exaspim_instrument.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",
-   "schema_version": "0.10.29",
+   "schema_version": "1.0.0",
    "instrument_id": "440_exaSPIM1-20231004",
    "modification_date": "2023-10-04",
    "instrument_type": "exaSPIM",
diff --git a/examples/fip_behavior_rig.json b/examples/fip_behavior_rig.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
-   "schema_version": "0.5.5",
+   "schema_version": "1.0.0",
    "rig_id": "447_FIP-Behavior_20000101",
    "modification_date": "2000-01-01",
    "mouse_platform": {
diff --git a/examples/fip_ophys_rig.json b/examples/fip_ophys_rig.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",
-   "schema_version": "0.5.5",
+   "schema_version": "1.0.0",
    "rig_id": "428_FIP1_20231003",
    "modification_date": "2023-10-03",
    "mouse_platform": {
diff --git a/examples/mri_session.json b/examples/mri_session.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
-   "schema_version": "0.3.5",
+   "schema_version": "1.0.0",
    "protocol_id": [
       "dx.doi.org/10.57824/protocols.io.bh7kl4n6"
    ],
diff --git a/examples/multiplane_ophys_session.json b/examples/multiplane_ophys_session.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
-   "schema_version": "0.3.5",
+   "schema_version": "1.0.0",
    "protocol_id": [],
    "experimenter_full_name": [
       "John Doe"
diff --git a/examples/ophys_procedures.json b/examples/ophys_procedures.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
-   "schema_version": "0.13.15",
+   "schema_version": "1.0.0",
    "subject_id": "625100",
    "subject_procedures": [
       {
diff --git a/examples/ophys_session.json b/examples/ophys_session.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
-   "schema_version": "0.3.5",
+   "schema_version": "1.0.0",
    "protocol_id": [],
    "experimenter_full_name": [
       "John Doe"
diff --git a/examples/procedures.json b/examples/procedures.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
-   "schema_version": "0.13.15",
+   "schema_version": "1.0.0",
    "subject_id": "625100",
    "subject_procedures": [
       {
diff --git a/examples/processing.json b/examples/processing.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/processing.py",
-   "schema_version": "0.4.9",
+   "schema_version": "1.0.0",
    "processing_pipeline": {
       "data_processes": [
          {
diff --git a/examples/quality_control.json b/examples/quality_control.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/quality_metrics.py",
-   "schema_version": "0.0.1",
+   "schema_version": "1.0.0",
    "overall_status": "Pass",
    "overall_status_date": "2022-11-22",
    "evaluations": [
diff --git a/examples/subject.json b/examples/subject.json
@@ -1,6 +1,6 @@
 {
    "describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/subject.py",
-   "schema_version": "0.5.10",
+   "schema_version": "1.0.0",
    "subject_id": "12345",
    "sex": "Male",
    "date_of_birth": "2022-11-22",
diff --git a/schemas/acquisition_schema.json b/schemas/acquisition_schema.json
@@ -5144,10 +5144,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.6.21",
-         "default": "0.6.21",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.6.21"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/data_description_schema.json b/schemas/data_description_schema.json
@@ -1775,10 +1775,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.13.12",
-         "default": "0.13.12",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.13.12"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/instrument_schema.json b/schemas/instrument_schema.json
@@ -9451,10 +9451,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.10.29",
-         "default": "0.10.29",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.10.29"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/metadata_schema.json b/schemas/metadata_schema.json
@@ -558,10 +558,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.6.21",
-               "default": "0.6.21",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.6.21"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -4872,10 +4872,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.13.12",
-               "default": "0.13.12",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.13.12"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -13176,10 +13176,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.10.29",
-               "default": "0.10.29",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.10.29"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -24205,10 +24205,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.13.15",
-               "default": "0.13.15",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.13.15"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -24329,10 +24329,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.4.9",
-               "default": "0.4.9",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.4.9"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -24711,10 +24711,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.0.1",
-               "default": "0.0.1",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.0.1"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -26606,10 +26606,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.5.5",
-               "default": "0.5.5",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.5.5"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -28742,10 +28742,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.3.5",
-               "default": "0.3.5",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.3.5"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -30998,10 +30998,10 @@
                "type": "string"
             },
             "schema_version": {
-               "const": "0.5.10",
-               "default": "0.5.10",
+               "const": "1.0.0",
+               "default": "1.0.0",
                "enum": [
-                  "0.5.10"
+                  "1.0.0"
                ],
                "title": "Schema Version",
                "type": "string"
@@ -34383,10 +34383,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.2.33",
-         "default": "0.2.33",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.2.33"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/procedures_schema.json b/schemas/procedures_schema.json
@@ -11385,10 +11385,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.13.15",
-         "default": "0.13.15",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.13.15"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/processing_schema.json b/schemas/processing_schema.json
@@ -332,10 +332,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.4.9",
-         "default": "0.4.9",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.4.9"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/quality_control_schema.json b/schemas/quality_control_schema.json
@@ -500,10 +500,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.0.1",
-         "default": "0.0.1",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.0.1"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/rig_schema.json b/schemas/rig_schema.json
@@ -18348,10 +18348,10 @@
          "type": "string"
       },
       "schema_version": {
-         "const": "0.5.5",
-         "default": "0.5.5",
+         "const": "1.0.0",
+         "default": "1.0.0",
          "enum": [
-            "0.5.5"
+            "1.0.0"
          ],
          "title": "Schema Version",
          "type": "string"
diff --git a/schemas/session_schema.json b/schemas/session_schema.json
diff --git a/schemas/subject_schema.json b/schemas/subject_schema.json
diff --git a/src/aind_data_schema/__init__.py b/src/aind_data_schema/__init__.py
diff --git a/src/aind_data_schema/core/acquisition.py b/src/aind_data_schema/core/acquisition.py
diff --git a/src/aind_data_schema/core/data_description.py b/src/aind_data_schema/core/data_description.py
diff --git a/src/aind_data_schema/core/instrument.py b/src/aind_data_schema/core/instrument.py
diff --git a/src/aind_data_schema/core/metadata.py b/src/aind_data_schema/core/metadata.py
diff --git a/src/aind_data_schema/core/procedures.py b/src/aind_data_schema/core/procedures.py
diff --git a/src/aind_data_schema/core/processing.py b/src/aind_data_schema/core/processing.py
diff --git a/src/aind_data_schema/core/quality_control.py b/src/aind_data_schema/core/quality_control.py
diff --git a/src/aind_data_schema/core/rig.py b/src/aind_data_schema/core/rig.py
diff --git a/src/aind_data_schema/core/session.py b/src/aind_data_schema/core/session.py
diff --git a/src/aind_data_schema/core/subject.py b/src/aind_data_schema/core/subject.py

Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/instrument.py",`
`3`		`- "schema_version": "0.10.29",`
	`3`	`+ "schema_version": "1.0.0",`
`4`	`4`	`"instrument_id": "440_SmartSPIM2_20231004",`
`5`	`5`	`"modification_date": "2023-10-04",`
`6`	`6`	`"instrument_type": "SmartSPIM",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",`
`3`		`- "schema_version": "0.13.15",`
	`3`	`+ "schema_version": "1.0.0",`
`4`	`4`	`"subject_id": "651286",`
`5`	`5`	`"subject_procedures": [`
`6`	`6`	`{`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",`
`3`		`- "schema_version": "0.3.5",`
	`3`	`+ "schema_version": "1.0.0",`
`4`	`4`	`"protocol_id": [],`
`5`	`5`	`"experimenter_full_name": [`
`6`	`6`	`"John Doe"`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/data_description.py",`
`3`		`- "schema_version": "0.13.12",`
	`3`	`+ "schema_version": "1.0.0",`
`4`	`4`	`"license": "CC-BY-4.0",`
`5`	`5`	`"platform": {`
`6`	`6`	`"name": "Electrophysiology platform",`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/rig.py",`
`3`		`- "schema_version": "0.5.5",`
	`3`	`+ "schema_version": "1.0.0",`
`4`	`4`	`"rig_id": "323_EPHYS1_20231003",`
`5`	`5`	`"modification_date": "2023-10-03",`
`6`	`6`	`"mouse_platform": {`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/acquisition.py",`
`3`		`- "schema_version": "0.6.21",`
	`3`	`+ "schema_version": "1.0.0",`
`4`	`4`	`"protocol_id": [],`
`5`	`5`	`"experimenter_full_name": [`
`6`	`6`	`"###"`