1519 hotfix 20 last minute bugs (#1520)

* fix: description for probeconfig coordinate system

* fix: remove InjectionDynamics.rate

* chore: typo

* docs: update docs

Author: dbirman

docs/source/components/configs.md

@@ -371,7 +371,7 @@ Configuration for a device inserted into a brain
 | `primary_targeted_structure` | [BrainAtlas](../aind_data_schema_models/brain_atlas.md#ccfv3) |  |
 | `other_targeted_structure` | Optional[List[[BrainAtlas](../aind_data_schema_models/brain_atlas.md#ccfv3)]] |  |
 | `atlas_coordinate` | Optional[[AtlasCoordinate](coordinates.md#atlascoordinate)] |  |
-| `coordinate_system` | [CoordinateSystem](coordinates.md#coordinatesystem) |  |
+| `coordinate_system` | [CoordinateSystem](coordinates.md#coordinatesystem) | Device coordinate system, defines un-rotated probe's orientation relative to the Acquisition.coordinate_system |
 | `transform` | List[[Translation](coordinates.md#translation) or [Rotation](coordinates.md#rotation) or [Scale](coordinates.md#scale) or [Affine](coordinates.md#affine)] | Entry coordinate, depth, and rotation in the Acquisition.coordinate_system |
 | `dye` | `Optional[str]` |  |
 | `notes` | `Optional[str]` |  |

docs/source/components/injection_procedures.md

@@ -24,8 +24,6 @@ Description of the volume and rate of an injection
 | `profile` | [InjectionProfile](#injectionprofile) |  |
 | `volume` | `Optional[float]` |  |
 | `volume_unit` | Optional[[VolumeUnit](../aind_data_schema_models/units.md#volumeunit)] |  |
-| `rate` | `Optional[float]` |  |
-| `rate_unit` | Optional[[VolumeUnit](../aind_data_schema_models/units.md#volumeunit)] |  |
 | `duration` | `Optional[float]` |  |
 | `duration_unit` | Optional[[TimeUnit](../aind_data_schema_models/units.md#timeunit)] |  |
 | `injection_current` | `Optional[float]` |  |

src/aind_data_schema/components/configs.py

@@ -438,7 +438,14 @@ class ProbeConfig(DeviceConfig):
     )
 
     # Transform
-    coordinate_system: CoordinateSystem = Field(..., title="Device coordinate system")
+    coordinate_system: CoordinateSystem = Field(
+        ...,
+        title="Device coordinate system",
+        description=(
+            "Device coordinate system, defines un-rotated probe's orientation relative to the "
+            "Acquisition.coordinate_system"
+        ),
+    )
     transform: TRANSFORM_TYPES = Field(
         ...,
         title="Device to acquisition transform",

src/aind_data_schema/components/injection_procedures.py

@@ -87,9 +87,6 @@ class InjectionDynamics(DataModel):
     volume: Optional[float] = Field(default=None, title="Injection volume")
     volume_unit: Optional[VolumeUnit] = Field(default=None, title="Injection volume unit")
 
-    rate: Optional[float] = Field(default=None, title="Injection rate")
-    rate_unit: Optional[VolumeUnit] = Field(default=None, title="Injection rate unit")
-
     duration: Optional[float] = Field(default=None, title="Injection duration")
     duration_unit: Optional[TimeUnit] = Field(default=None, title="Injection duration unit")