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docs: overhaul example workflow and clean it up (#1497)
* docs: overhaul example workflow and clean it up * docs: rebuild docs * docs: bump aind-data-schema-models version * docs: fix link to PIDName objects * chore: lint * docs: fix a bad docstring * docs: remove redundant workflow file * fix: properly unwrap Annotated[] fields with metadata * chore: bump models version * chore: changes required for bump to adsm 4.2.7 * docs: fix bug causing Annotated[] to not unwrap properly, re-build docs * chore: lint
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‎docs/source/aind_data_schema_models/organizations.md‎

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@@ -9,94 +9,94 @@ Organization
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| Name | abbreviation | name | registry | registry_identifier |
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|------|------|------|------|------|
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| `AA_OPTO_ELECTRONIC` | `None` | `AA Opto Electronic` | `None` | `None` |
12-
| `ABCAM` | `None` | `Abcam` | `name='Research Organization Registry' abbreviation='ROR'` | `02e1wjw63` |
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| `ADDGENE` | `None` | `Addgene` | `name='Research Organization Registry' abbreviation='ROR'` | `01nn1pw54` |
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| `AI` | `AI` | `Allen Institute` | `name='Research Organization Registry' abbreviation='ROR'` | `03cpe7c52` |
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| `AIBS` | `AIBS` | `Allen Institute for Brain Science` | `name='Research Organization Registry' abbreviation='ROR'` | `00dcv1019` |
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| `ABCAM` | `None` | `Abcam` | `Registry.ROR` | `02e1wjw63` |
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| `ADDGENE` | `None` | `Addgene` | `Registry.ROR` | `01nn1pw54` |
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| `AI` | `AI` | `Allen Institute` | `Registry.ROR` | `03cpe7c52` |
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| `AIBS` | `AIBS` | `Allen Institute for Brain Science` | `Registry.ROR` | `00dcv1019` |
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| `AILIPU` | `Ailipu` | `Ailipu Technology Co` | `None` | `None` |
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| `AIND` | `AIND` | `Allen Institute for Neural Dynamics` | `name='Research Organization Registry' abbreviation='ROR'` | `04szwah67` |
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| `AMS_OSRAM` | `None` | `ams OSRAM` | `name='Research Organization Registry' abbreviation='ROR'` | `045d0h266` |
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| `AIND` | `AIND` | `Allen Institute for Neural Dynamics` | `Registry.ROR` | `04szwah67` |
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| `AMS_OSRAM` | `None` | `ams OSRAM` | `Registry.ROR` | `045d0h266` |
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| `ARECONT_VISION_COSTAR` | `None` | `Arecont Vision Costar` | `None` | `None` |
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| `ASI` | `ASI` | `Applied Scientific Instrumentation` | `None` | `None` |
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| `ASUS` | `None` | `ASUS` | `name='Research Organization Registry' abbreviation='ROR'` | `00bxkz165` |
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| `ASUS` | `None` | `ASUS` | `Registry.ROR` | `00bxkz165` |
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| `BASLER` | `None` | `Basler` | `None` | `None` |
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| `BCM` | `BCM` | `Baylor College of Medicine` | `name='Research Organization Registry' abbreviation='ROR'` | `02pttbw34` |
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| `BU` | `BU` | `Boston University` | `name='Research Organization Registry' abbreviation='ROR'` | `05qwgg493` |
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| `CAJAL` | `Cajal` | `Cajal Neuroscience` | `name='Research Organization Registry' abbreviation='ROR'` | `05pdc0q70` |
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| `BCM` | `BCM` | `Baylor College of Medicine` | `Registry.ROR` | `02pttbw34` |
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| `BU` | `BU` | `Boston University` | `Registry.ROR` | `05qwgg493` |
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| `CAJAL` | `Cajal` | `Cajal Neuroscience` | `Registry.ROR` | `05pdc0q70` |
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| `CAMBRIDGE_TECHNOLOGY` | `None` | `Cambridge Technology` | `None` | `None` |
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| `CARL_ZEISS` | `None` | `Carl Zeiss` | `name='Research Organization Registry' abbreviation='ROR'` | `01xk5xs43` |
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| `CARL_ZEISS` | `None` | `Carl Zeiss` | `Registry.ROR` | `01xk5xs43` |
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| `CATHETER_IMPLANT_INSTITUTIONS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `CHAMPALIMAUD` | `Champalimaud` | `Champalimaud Foundation` | `name='Research Organization Registry' abbreviation='ROR'` | `03g001n57` |
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| `CHAMPALIMAUD` | `Champalimaud` | `Champalimaud Foundation` | `Registry.ROR` | `03g001n57` |
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| `CHROMA` | `None` | `Chroma` | `None` | `None` |
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| `COHERENT_SCIENTIFIC` | `None` | `Coherent Scientific` | `name='Research Organization Registry' abbreviation='ROR'` | `031tysd23` |
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| `COLUMBIA` | `Columbia` | `Columbia University` | `name='Research Organization Registry' abbreviation='ROR'` | `00hj8s172` |
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| `COHERENT_SCIENTIFIC` | `None` | `Coherent Scientific` | `Registry.ROR` | `031tysd23` |
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| `COLUMBIA` | `Columbia` | `Columbia University` | `Registry.ROR` | `00hj8s172` |
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| `COMPUTAR` | `None` | `Computar` | `None` | `None` |
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| `CONOPTICS` | `None` | `Conoptics` | `None` | `None` |
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| `CRL` | `CRL` | `Charles River Laboratories` | `name='Research Organization Registry' abbreviation='ROR'` | `03ndmsg87` |
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| `CRL` | `CRL` | `Charles River Laboratories` | `Registry.ROR` | `03ndmsg87` |
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| `CUSTOM` | `None` | `Custom` | `None` | `None` |
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| `CZI` | `CZI` | `Chan Zuckerberg Initiative` | `name='Research Organization Registry' abbreviation='ROR'` | `02qenvm24` |
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| `CZI` | `CZI` | `Chan Zuckerberg Initiative` | `Registry.ROR` | `02qenvm24` |
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| `DAQ_DEVICE_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `DETECTOR_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `DIGIKEY` | `None` | `DigiKey` | `None` | `None` |
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| `DODOTRONIC` | `None` | `Dodotronic` | `None` | `None` |
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| `DORIC` | `None` | `Doric` | `name='Research Organization Registry' abbreviation='ROR'` | `059n53q30` |
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| `DORIC` | `None` | `Doric` | `Registry.ROR` | `059n53q30` |
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| `EALING` | `None` | `Ealing` | `None` | `None` |
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| `EDMUND_OPTICS` | `None` | `Edmund Optics` | `name='Research Organization Registry' abbreviation='ROR'` | `01j1gwp17` |
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| `EMORY` | `Emory` | `Emory University` | `name='Research Organization Registry' abbreviation='ROR'` | `03czfpz43` |
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| `EDMUND_OPTICS` | `None` | `Edmund Optics` | `Registry.ROR` | `01j1gwp17` |
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| `EMORY` | `Emory` | `Emory University` | `Registry.ROR` | `03czfpz43` |
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| `EURESYS` | `None` | `Euresys` | `None` | `None` |
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| `FILTER_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `FLIR` | `FLIR` | `Teledyne FLIR` | `name='Research Organization Registry' abbreviation='ROR'` | `01j1gwp17` |
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| `FLIR` | `FLIR` | `Teledyne FLIR` | `Registry.ROR` | `01j1gwp17` |
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| `FUJINON` | `None` | `Fujinon` | `None` | `None` |
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| `FUNDERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `HAMAMATSU` | `None` | `Hamamatsu` | `name='Research Organization Registry' abbreviation='ROR'` | `03natb733` |
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| `HAMAMATSU` | `None` | `Hamamatsu` | `Registry.ROR` | `03natb733` |
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| `HAMILTON` | `None` | `Hamilton` | `None` | `None` |
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| `HUST` | `HUST` | `Huazhong University of Science and Technology` | `name='Research Organization Registry' abbreviation='ROR'` | `00p991c53` |
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| `IDT` | `IDT` | `Integrated DNA Technologies` | `name='Research Organization Registry' abbreviation='ROR'` | `009jvpf03` |
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| `IMEC` | `IMEC` | `Interuniversity Microelectronics Center` | `name='Research Organization Registry' abbreviation='ROR'` | `02kcbn207` |
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| `HUST` | `HUST` | `Huazhong University of Science and Technology` | `Registry.ROR` | `00p991c53` |
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| `IDT` | `IDT` | `Integrated DNA Technologies` | `Registry.ROR` | `009jvpf03` |
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| `IMEC` | `IMEC` | `Interuniversity Microelectronics Center` | `Registry.ROR` | `02kcbn207` |
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| `INFINITY_PHOTO_OPTICAL` | `None` | `Infinity Photo-Optical` | `None` | `None` |
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| `INVITROGEN` | `None` | `Invitrogen` | `name='Research Organization Registry' abbreviation='ROR'` | `03x1ewr52` |
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| `INVITROGEN` | `None` | `Invitrogen` | `Registry.ROR` | `03x1ewr52` |
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| `IR_ROBOT_CO` | `None` | `IR Robot Co` | `None` | `None` |
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| `ISL` | `ISL` | `ISL Products International` | `None` | `None` |
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| `ITEM` | `None` | `Item` | `None` | `None` |
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| `JANELIA` | `Janelia` | `Janelia Research Campus` | `name='Research Organization Registry' abbreviation='ROR'` | `013sk6x84` |
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| `JAX` | `JAX` | `Jackson Laboratory` | `name='Research Organization Registry' abbreviation='ROR'` | `021sy4w91` |
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| `JENOPTIK` | `None` | `Jenoptik` | `name='Research Organization Registry' abbreviation='ROR'` | `05g7t5c49` |
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| `JHU` | `JHU` | `Johns Hopkins University` | `name='Research Organization Registry' abbreviation='ROR'` | `00za53h95` |
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| `JANELIA` | `Janelia` | `Janelia Research Campus` | `Registry.ROR` | `013sk6x84` |
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| `JAX` | `JAX` | `Jackson Laboratory` | `Registry.ROR` | `021sy4w91` |
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| `JENOPTIK` | `None` | `Jenoptik` | `Registry.ROR` | `05g7t5c49` |
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| `JHU` | `JHU` | `Johns Hopkins University` | `Registry.ROR` | `00za53h95` |
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| `JULABO` | `None` | `Julabo` | `None` | `None` |
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| `KOWA` | `None` | `Kowa` | `name='Research Organization Registry' abbreviation='ROR'` | `03zbwg482` |
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| `KOWA` | `None` | `Kowa` | `Registry.ROR` | `03zbwg482` |
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| `LASER_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `LASOS` | `LASOS` | `LASOS Lasertechnik` | `None` | `None` |
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| `LED_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `LEICA` | `None` | `Leica` | `None` | `None` |
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| `LENS_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `LG` | `None` | `LG` | `name='Research Organization Registry' abbreviation='ROR'` | `02b948n83` |
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| `LG` | `None` | `LG` | `Registry.ROR` | `02b948n83` |
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| `LIFECANVAS` | `None` | `LifeCanvas` | `None` | `None` |
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| `LUMEN_DYNAMICS` | `None` | `Lumen Dynamics` | `None` | `None` |
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| `MANIPULATOR_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `MBF` | `MBF` | `MBF Bioscience` | `name='Research Organization Registry' abbreviation='ROR'` | `02zynam48` |
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| `MEADOWLARK_OPTICS` | `None` | `Meadowlark Optics` | `name='Research Organization Registry' abbreviation='ROR'` | `00n8qbq54` |
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| `MIBR` | `MIBR` | `McGovern Institute for Brain Research` | `name='Research Organization Registry' abbreviation='ROR'` | `05ymca674` |
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| `MBF` | `MBF` | `MBF Bioscience` | `Registry.ROR` | `02zynam48` |
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| `MEADOWLARK_OPTICS` | `None` | `Meadowlark Optics` | `Registry.ROR` | `00n8qbq54` |
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| `MIBR` | `MIBR` | `McGovern Institute for Brain Research` | `Registry.ROR` | `05ymca674` |
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| `MIDOPT` | `MidOpt` | `Midwest Optical Systems, Inc.` | `None` | `None` |
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| `MIT` | `MIT` | `Massachusetts Institute of Technology` | `name='Research Organization Registry' abbreviation='ROR'` | `042nb2s44` |
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| `MIT` | `MIT` | `Massachusetts Institute of Technology` | `Registry.ROR` | `042nb2s44` |
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| `MITUTUYO` | `None` | `Mitutuyo` | `None` | `None` |
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| `MIT_BCS` | `MIT-BCS` | `MIT Department of Brain and Cognitive Sciences` | `None` | `None` |
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| `MJFF` | `MJFF` | `Michael J. Fox Foundation for Parkinson's Research` | `name='Research Organization Registry' abbreviation='ROR'` | `03arq3225` |
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| `MKS_NEWPORT` | `None` | `MKS Newport` | `name='Research Organization Registry' abbreviation='ROR'` | `00k17f049` |
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| `MJFF` | `MJFF` | `Michael J. Fox Foundation for Parkinson's Research` | `Registry.ROR` | `03arq3225` |
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| `MKS_NEWPORT` | `None` | `MKS Newport` | `Registry.ROR` | `00k17f049` |
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| `MONITOR_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `MPI` | `MPI` | `MPI` | `None` | `None` |
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| `NATIONAL_INSTRUMENTS` | `None` | `National Instruments` | `name='Research Organization Registry' abbreviation='ROR'` | `026exqw73` |
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| `NATIONAL_INSTRUMENTS` | `None` | `National Instruments` | `Registry.ROR` | `026exqw73` |
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| `NAVITAR` | `None` | `Navitar` | `None` | `None` |
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| `NCCIH` | `NCCIH` | `National Center for Complementary and Integrative Health` | `name='Research Organization Registry' abbreviation='ROR'` | `00190t495` |
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| `NCCIH` | `NCCIH` | `National Center for Complementary and Integrative Health` | `Registry.ROR` | `00190t495` |
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| `NEURALYNX` | `None` | `NeuraLynx` | `None` | `None` |
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| `NEUROPHOTOMETRICS` | `None` | `Neurophotometrics` | `None` | `None` |
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| `NEW_SCALE_TECHNOLOGIES` | `None` | `New Scale Technologies` | `None` | `None` |
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| `NIKON` | `None` | `Nikon` | `name='Research Organization Registry' abbreviation='ROR'` | `0280y9h11` |
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| `NIMH` | `NIMH` | `National Institute of Mental Health` | `name='Research Organization Registry' abbreviation='ROR'` | `04xeg9z08` |
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| `NINDS` | `NINDS` | `National Institute of Neurological Disorders and Stroke` | `name='Research Organization Registry' abbreviation='ROR'` | `01s5ya894` |
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| `NIKON` | `None` | `Nikon` | `Registry.ROR` | `0280y9h11` |
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| `NIMH` | `NIMH` | `National Institute of Mental Health` | `Registry.ROR` | `04xeg9z08` |
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| `NINDS` | `NINDS` | `National Institute of Neurological Disorders and Stroke` | `Registry.ROR` | `01s5ya894` |
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| `NRESEARCH_INC` | `None` | `NResearch Inc` | `None` | `None` |
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| `NYU` | `NYU` | `New York University` | `name='Research Organization Registry' abbreviation='ROR'` | `0190ak572` |
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| `OEPS` | `OEPS` | `Open Ephys Production Site` | `name='Research Organization Registry' abbreviation='ROR'` | `007rkz355` |
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| `OLYMPUS` | `None` | `Olympus` | `name='Research Organization Registry' abbreviation='ROR'` | `02vcdte90` |
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| `NYU` | `NYU` | `New York University` | `Registry.ROR` | `0190ak572` |
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| `OEPS` | `OEPS` | `Open Ephys Production Site` | `Registry.ROR` | `007rkz355` |
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| `OLYMPUS` | `None` | `Olympus` | `Registry.ROR` | `02vcdte90` |
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| `OPTOTUNE` | `None` | `Optotune` | `None` | `None` |
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| `OTHER` | `None` | `Other` | `None` | `None` |
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| `OXXIUS` | `None` | `Oxxius` | `None` | `None` |
@@ -111,22 +111,22 @@ Organization
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| `SEMROCK` | `None` | `Semrock` | `None` | `None` |
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| `SICGEN` | `None` | `SICGEN` | `None` | `None` |
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| `SIGMA_ALDRICH` | `None` | `Sigma-Aldrich` | `None` | `None` |
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| `SIMONS_FOUNDATION` | `None` | `Simons Foundation` | `name='Research Organization Registry' abbreviation='ROR'` | `01cmst727` |
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| `SIMONS_FOUNDATION` | `None` | `Simons Foundation` | `Registry.ROR` | `01cmst727` |
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| `SPEAKER_MANUFACTURERS` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `SPECTRA_PHYSICS` | `None` | `Spectra-Physics` | `name='Research Organization Registry' abbreviation='ROR'` | `02ad9kp97` |
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| `SPECTRA_PHYSICS` | `None` | `Spectra-Physics` | `Registry.ROR` | `02ad9kp97` |
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| `SPINNAKER` | `None` | `Spinnaker` | `None` | `None` |
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| `SUBJECT_SOURCES` | `N/A` | `N/A` | `N/A` | `N/A` |
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| `TAMRON` | `None` | `Tamron` | `None` | `None` |
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| `THERMO_FISHER_SCIENTIFIC` | `None` | `Thermo Fisher Scientific` | `name='Research Organization Registry' abbreviation='ROR'` | `03x1ewr52` |
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| `THERMO_FISHER_SCIENTIFIC` | `None` | `Thermo Fisher Scientific` | `Registry.ROR` | `03x1ewr52` |
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| `THE_IMAGING_SOURCE` | `None` | `The Imaging Source` | `None` | `None` |
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| `THE_LEE_COMPANY` | `None` | `The Lee Company` | `None` | `None` |
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| `THORLABS` | `None` | `Thorlabs` | `name='Research Organization Registry' abbreviation='ROR'` | `04gsnvb07` |
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| `THORLABS` | `None` | `Thorlabs` | `Registry.ROR` | `04gsnvb07` |
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| `TMC` | `TMC` | `Technical Manufacturing Corporation` | `None` | `None` |
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| `TRANSDUCER_TECHNIQUES` | `None` | `Transducer Techniques` | `None` | `None` |
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| `TWCF` | `TWCF` | `Templeton World Charity Foundation` | `name='Research Organization Registry' abbreviation='ROR'` | `00x0z1472` |
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| `TWCF` | `TWCF` | `Templeton World Charity Foundation` | `Registry.ROR` | `00x0z1472` |
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| `TYMPHANY` | `None` | `Tymphany` | `None` | `None` |
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| `UCSD` | `UCSD` | `University of California, San Diego` | `name='Research Organization Registry' abbreviation='ROR'` | `0168r3w48` |
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| `UPENN` | `UPENN` | `University of Pennsylvania` | `name='Research Organization Registry' abbreviation='ROR'` | `00b30xv10` |
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| `UCSD` | `UCSD` | `University of California, San Diego` | `Registry.ROR` | `0168r3w48` |
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| `UPENN` | `UPENN` | `University of Pennsylvania` | `Registry.ROR` | `00b30xv10` |
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| `VIEWORKS` | `None` | `Vieworks` | `None` | `None` |
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| `VORTRAN` | `None` | `Vortran` | `None` | `None` |
132132

‎docs/source/aind_data_schema_models/pid_names.md‎

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# Pid_names
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## Model definitions
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### PIDName
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Model for associate a name with a persistent identifier (PID),
8+
the registry for that PID, and abbreviation for that registry
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| Field | Type | Description |
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|-------|------|-------------|
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| `name` | `str` | Name |
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| `abbreviation` | `Optional[str]` | Abbreviation |
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| `registry` | `Union[aind_data_schema_models.registries.Registry, str, NoneType]` | Registry |
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| `registry_identifier` | `Optional[str]` | Registry identifier |
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‎docs/source/aind_data_schema_models/reagent.md‎

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# Reagent
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## Model definitions
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### FluorophoreType
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Fluorophores types
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| Name | Value |
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|------|-------|
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| `ALEXA` | `Alexa Fluor` |
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| `ATTO` | `Atto` |
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| `CF` | `CF` |
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| `CYANINE` | `Cyanine` |
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| `DYLIGHT` | `DyLight` |
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17+
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### StainType
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Stain types for probes describing what is being labeled
21+
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| Name | Value |
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|------|-------|
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| `CYTOSKELETON` | `Cytoskeleton` |
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| `FILL` | `Fill` |
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| `RNA` | `RNA` |
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| `PROTEIN` | `Protein` |
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| `NUCLEAR` | `Nuclear` |
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| `VASCULATURE` | `Vasculature` |
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‎docs/source/aind_data_schema_models/registries.md‎

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66

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Registries
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9-
| Name | name | abbreviation |
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|------|------|------|
11-
| `ADDGENE` | `Addgene` | `ADDGENE` |
12-
| `EMAPA` | `Edinburgh Mouse Atlas Project` | `EMAPA` |
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| `MGI` | `Mouse Genome Informatics` | `MGI` |
14-
| `NCBI` | `National Center for Biotechnology Information` | `NCBI` |
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| `ORCID` | `Open Researcher and Contributor ID` | `ORCID` |
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| `ROR` | `Research Organization Registry` | `ROR` |
17-
| `RRID` | `Research Resource Identifiers` | `RRID` |
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| `UNIPROT` | `Universal Protein Resource` | `UNIPROT` |
9+
| Name | Value |
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|------|-------|
11+
| `ADDGENE` | `Addgene (ADDGENE)` |
12+
| `EMAPA` | `Edinburgh Mouse Atlas Project (EMAPA)` |
13+
| `MGI` | `Mouse Genome Informatics (MGI)` |
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| `NCBI` | `National Center for Biotechnology Information (NCBI)` |
15+
| `ORCID` | `Open Researcher and Contributor ID (ORCID)` |
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| `ROR` | `Research Organization Registry (ROR)` |
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| `RRID` | `Research Resource Identifiers (RRID)` |
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| `UNIPROT` | `Universal Protein Resource (UNIPROT)` |
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2020

‎docs/source/aind_data_schema_models/species.md‎

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@@ -8,18 +8,18 @@ Species
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| Name | name | common_name | registry | registry_identifier |
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|------|------|------|------|------|
11-
| `ALPACA` | `Vicuna pacos` | `Alpaca` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid30538` |
12-
| `CHICKEN` | `Gallus gallus` | `Chicken` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9031` |
13-
| `COMMON_MARMOSET` | `Callithrix jacchus` | `Common marmoset` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9483` |
14-
| `DONKEY` | `Equus asinus` | `Donkey` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9793` |
15-
| `EUROPEAN_RABBIT` | `Oryctolagus cuniculus` | `European rabbit` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9986` |
16-
| `GOAT` | `Carpa hircus` | `Goat` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9925` |
17-
| `GUINEA_PIG` | `Cavia porcellus` | `Guinea pig` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid10141` |
18-
| `HOUSE_MOUSE` | `Mus musculus` | `House mouse` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid10090` |
19-
| `HUMAN` | `Homo sapiens` | `Human` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9606` |
20-
| `LLAMA` | `Lama glama` | `Llama` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9844` |
21-
| `NORWAY_RAT` | `Rattus norvegicus` | `Norway rat` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid10116` |
22-
| `RHESUS_MACAQUE` | `Macaca mulatta` | `Rhesus macaque` | `name='National Center for Biotechnology Information' abbreviation='NCBI'` | `NCBI:txid9544` |
11+
| `ALPACA` | `Vicuna pacos` | `Alpaca` | `Registry.NCBI` | `NCBI:txid30538` |
12+
| `CHICKEN` | `Gallus gallus` | `Chicken` | `Registry.NCBI` | `NCBI:txid9031` |
13+
| `COMMON_MARMOSET` | `Callithrix jacchus` | `Common marmoset` | `Registry.NCBI` | `NCBI:txid9483` |
14+
| `DONKEY` | `Equus asinus` | `Donkey` | `Registry.NCBI` | `NCBI:txid9793` |
15+
| `EUROPEAN_RABBIT` | `Oryctolagus cuniculus` | `European rabbit` | `Registry.NCBI` | `NCBI:txid9986` |
16+
| `GOAT` | `Carpa hircus` | `Goat` | `Registry.NCBI` | `NCBI:txid9925` |
17+
| `GUINEA_PIG` | `Cavia porcellus` | `Guinea pig` | `Registry.NCBI` | `NCBI:txid10141` |
18+
| `HOUSE_MOUSE` | `Mus musculus` | `House mouse` | `Registry.NCBI` | `NCBI:txid10090` |
19+
| `HUMAN` | `Homo sapiens` | `Human` | `Registry.NCBI` | `NCBI:txid9606` |
20+
| `LLAMA` | `Lama glama` | `Llama` | `Registry.NCBI` | `NCBI:txid9844` |
21+
| `NORWAY_RAT` | `Rattus norvegicus` | `Norway rat` | `Registry.NCBI` | `NCBI:txid10116` |
22+
| `RHESUS_MACAQUE` | `Macaca mulatta` | `Rhesus macaque` | `Registry.NCBI` | `NCBI:txid9544` |
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### Strain
@@ -28,8 +28,8 @@ Strain
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| Name | name | species | registry | registry_identifier |
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|------|------|------|------|------|
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| `BALB_C` | `BALB/c` | `Mus musculus` | `name='Mouse Genome Informatics' abbreviation='MGI'` | `MGI:2159737` |
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| `C57BL_6J` | `C57BL/6J` | `Mus musculus` | `name='Mouse Genome Informatics' abbreviation='MGI'` | `MGI:3028467` |
33-
| `UNKNOWN` | `Unknown` | `Mus musculus` | `None` | `nan` |
31+
| `BALB_C` | `BALB/c` | `Mus musculus` | `Registry.MGI` | `MGI:2159737` |
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| `C57BL_6J` | `C57BL/6J` | `Mus musculus` | `Registry.MGI` | `MGI:3028467` |
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| `UNKNOWN` | `Unknown` | `Mus musculus` | `None` | `None` |
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