Merge pull request #1024 from AllenNeuralDynamics/release-v0.39.0

Release v0.39.0

Author: jtyoung84

.github/workflows/publish_dev.yml

@@ -0,0 +1,38 @@
+name: Publish - dev 
+on:
+  push:
+    branches:
+      - dev
+
+jobs:
+  upload_schemas_dev:
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write
+      contents: read
+    env:
+      AWS_DATA_SCHEMA_ROLE: ${{ secrets.AWS_DATA_SCHEMA_ROLE_DEV }}
+      AWS_DATA_SCHEMA_BUCKET: ${{ vars.AWS_DATA_SCHEMA_BUCKET_DEV }}
+      AWS_REGION : ${{ vars.AWS_REGION_DEV }}
+      TEMP_DIR: 'temp_schemas'
+      S3_PREFIX: 'schemas'
+    steps:
+      - uses: actions/checkout@master
+      - name: Pull latest changes
+        run: git pull origin dev
+      - name: Set up Python 3.8
+        uses: actions/setup-python@v3
+        with:
+          python-version: 3.8
+      - name: Configure aws credentials
+        uses: aws-actions/configure-aws-credentials@v2
+        with:
+          role-to-assume: ${{ env.AWS_DATA_SCHEMA_ROLE }}
+          role-session-name: github-schema-upload-session
+          aws-region: ${{ env.AWS_REGION }}
+      - name: Create and upload schemas
+        run: | 
+          python -m pip install -e .
+          python -m aind_data_schema.utils.json_writer --output $TEMP_DIR --attach-version
+          python -m pip install awscli
+          aws s3 sync $TEMP_DIR s3://${AWS_DATA_SCHEMA_BUCKET}/$S3_PREFIX

.github/workflows/ci.yml .github/workflows/run_dev_tests.yml.github/workflows/ci.yml renamed to .github/workflows/run_dev_tests.yml

@@ -1,9 +1,9 @@
-name: CI
+name: Run check in dev
 
 on:
   pull_request:
     branches:
-      - main
+      - dev
 
 jobs:
   linters:

.github/workflows/run_main_tests.yml

@@ -0,0 +1,58 @@
+name: Run checks in main and release
+
+on:
+  pull_request:
+    branches:
+      - '*release*'
+      - main
+
+jobs:
+  linters:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ '3.11' ]
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install -e .[linters] --no-cache-dir
+      - name: Run linters
+        run: flake8 . && interrogate . && codespell src examples tests
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ '3.8', '3.9', '3.10', '3.11' ]
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        sudo apt install graphviz libgraphviz-dev -y
+        python -m pip install -e .[dev] -e .[docs] --no-cache-dir
+    - name: Run tests and coverage
+      run: coverage run -m unittest discover && coverage report
+  verify_version:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - name: Check version incremented
+        run: |
+          pkg_name=$(grep -P 'version = \{attr = .*\}' pyproject.toml | grep -oP '\w+.__version__')
+          init_file="./src/${pkg_name//.__version__}/__init__.py"
+          pkg_version=$(grep -Po '[0-9]+\.[0-9]+\.[0-9]+' "$init_file")
+          latest_tag=$(git ls-remote --tags --refs --sort="v:refname" | tail -n1 | sed 's/.*\///')
+          echo "Checking pkg_version v$pkg_version and latest_tag $latest_tag"
+          if [ "$latest_tag" == "v$pkg_version" ]
+          then
+            exit 1
+          fi
+          echo "Versions are different"