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‎examples/aibs_smartspim_procedures.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
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"schema_version": "0.12.7",
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"schema_version": "0.12.8",
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"subject_id": "651286",
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"subject_procedures": [
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{

‎examples/bergamo_ophys_session.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
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"schema_version": "0.1.10",
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"schema_version": "0.1.11",
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"protocol_id": [],
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"experimenter_full_name": [
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"John Doe"

‎examples/ephys_session.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
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"schema_version": "0.1.10",
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"schema_version": "0.1.11",
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"protocol_id": [],
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"experimenter_full_name": [
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"Jane Doe"

‎examples/multiplane_ophys_session.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
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"schema_version": "0.1.10",
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"schema_version": "0.1.11",
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"protocol_id": [],
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"experimenter_full_name": [
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"John Doe"

‎examples/ophys_procedures.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
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"schema_version": "0.12.7",
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"schema_version": "0.12.8",
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"subject_id": "625100",
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"subject_procedures": [
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{

‎examples/ophys_session.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
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"schema_version": "0.1.10",
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"schema_version": "0.1.11",
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"protocol_id": [],
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"experimenter_full_name": [
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"John Doe"

‎examples/procedures.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/procedures.py",
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"schema_version": "0.12.7",
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"schema_version": "0.12.8",
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"subject_id": "625100",
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"subject_procedures": [
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{

‎schemas/metadata_schema.json‎

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],
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"title": "Manipulator coordinates"
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},
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"implant_hole_number": {
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"anyOf": [
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{
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"type": "integer"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Implant hole number"
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},
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"ephys_probes": {
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"items": {
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"$ref": "#/$defs/EphysProbeConfig"
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],
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"title": "Manipulator coordinates"
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},
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"implant_hole_number": {
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"anyOf": [
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{
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"type": "integer"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Implant hole number"
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},
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"fiber_connections": {
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"default": [],
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"items": {
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"title": "GenericHarpDevice",
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"type": "object"
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},
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"GroundWireMaterial": {
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"description": "Ground wire material name",
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"enum": [
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"Silver",
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"Platinum iridium"
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],
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"title": "GroundWireMaterial",
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"type": "string"
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},
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"Group": {
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"description": "Data collection group name",
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"enum": [
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}
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],
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"title": "Manipulator coordinates"
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},
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"implant_hole_number": {
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"anyOf": [
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{
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"type": "integer"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Implant hole number"
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}
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},
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"required": [
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"type": "string"
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},
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"schema_version": {
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"const": "0.12.7",
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"default": "0.12.7",
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"const": "0.12.8",
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"default": "0.12.8",
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"title": "Schema Version"
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},
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"subject_id": {
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"ProtectiveMaterial": {
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"description": "Name of material applied to craniotomy",
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"enum": [
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"Agarose",
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"Duragel",
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"Kwik-Cast",
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"SORTA-clear",
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"title": "ProtectiveMaterial",
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"type": "string"
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},
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"ProtectiveMaterialReplacement": {
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"additionalProperties": false,
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"description": "Description of a protective material replacement procedure in preparation for ephys recording",
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"properties": {
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"procedure_type": {
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"const": "Ground wire",
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"default": "Ground wire",
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"title": "Procedure Type"
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},
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"protocol_id": {
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"description": "DOI for protocols.io",
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"title": "Protocol ID",
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"type": "string"
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},
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"protective_material": {
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"allOf": [
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{
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"$ref": "#/$defs/ProtectiveMaterial"
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}
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],
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"description": "New material being applied",
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"title": "Protective material"
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},
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"ground_wire_hole": {
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"anyOf": [
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{
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"type": "integer"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Ground wire hole"
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},
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"ground_wire_material": {
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"anyOf": [
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{
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"$ref": "#/$defs/GroundWireMaterial"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Ground wire material"
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},
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"ground_wire_diameter": {
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"anyOf": [
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{
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"type": "number"
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},
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{
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"type": "string"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Ground wire diameter"
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},
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"ground_wire_diameter_unit": {
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"allOf": [
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{
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"$ref": "#/$defs/SizeUnit"
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}
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],
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"default": "inch",
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"title": "Ground wire diameter unit"
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},
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"well_part_number": {
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"anyOf": [
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{
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"type": "string"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Well part number"
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},
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"well_type": {
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"anyOf": [
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{
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"type": "string"
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},
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{
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"type": "null"
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}
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],
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"default": null,
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"title": "Well type"
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}
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},
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"required": [
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"protocol_id",
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"protective_material"
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],
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"title": "ProtectiveMaterialReplacement",
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"type": "object"
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},
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"PulseShape": {
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"description": "Types of Opto stim pulse shapes",
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"enum": [
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"type": "string"
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},
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"schema_version": {
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"const": "0.1.10",
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"default": "0.1.10",
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"const": "0.1.11",
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"default": "0.1.11",
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"title": "Schema Version"
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},
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"protocol_id": {
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"mapping": {
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"Craniotomy": "#/$defs/Craniotomy",
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"Fiber implant": "#/$defs/FiberImplant",
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"Ground wire": "#/$defs/ProtectiveMaterialReplacement",
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"Headframe": "#/$defs/Headframe",
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"ICM injection": "#/$defs/IntraCisternalMagnaInjection",
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"ICV injection": "#/$defs/IntraCerebellarVentricleInjection",
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{
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"$ref": "#/$defs/NanojectInjection"
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},
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{
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"$ref": "#/$defs/OtherSubjectProcedure"
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},
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{
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"$ref": "#/$defs/Perfusion"
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},
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{
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"$ref": "#/$defs/OtherSubjectProcedure"
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"$ref": "#/$defs/ProtectiveMaterialReplacement"
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},
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{
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"$ref": "#/$defs/RetroOrbitalInjection"
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"type": "string"
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},
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"schema_version": {
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"const": "0.1.39",
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"default": "0.1.39",
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"const": "0.1.40",
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"default": "0.1.40",
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"title": "Schema Version"
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},
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"_id": {

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