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Merge pull request #795 from AllenNeuralDynamics/791-add-fields-to-fieldofview-in-session
791 add fields to fieldofview in session
2 parents 8e7a2fa + 1e0759e commit fae8faf

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5 files changed

+529
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lines changed

‎examples/bergamo_ophys_session.json‎

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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "20",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": null
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"coupled_fov_index": null,
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"power": null,
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"power_unit": "percent",
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"scanfield_z": null,
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"scanfield_z_unit": "micrometer",
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"scanimage_roi_index": null,
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"notes": null
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}
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],
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"slap_fovs": null,

‎examples/multiplane_ophys_session.json‎

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{
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"describedBy": "https://raw.githubusercontent.com/AllenNeuralDynamics/aind-data-schema/main/src/aind_data_schema/core/session.py",
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"schema_version": "0.1.8",
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"protocol_id": [],
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"experimenter_full_name": [
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"John Doe"
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],
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"session_start_time": "2022-07-12T07:00:00",
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"session_end_time": "2022-07-12T07:00:00",
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"session_type": "Mesoscope",
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"iacuc_protocol": "12345",
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"rig_id": "MESO.1",
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"calibrations": [],
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"maintenance": [],
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"subject_id": "12345",
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"animal_weight_prior": null,
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"animal_weight_post": null,
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"weight_unit": "gram",
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"data_streams": [
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{
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"stream_start_time": "2022-07-12T07:00:00",
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"stream_end_time": "2022-07-12T07:00:00",
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"daq_names": [],
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"camera_names": [
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"Mesoscope",
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"Eye",
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"Face",
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"Behavior",
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"Vasculature"
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],
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"light_sources": [
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{
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"device_type": "Laser",
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"name": "Laser A",
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"wavelength": 920,
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"wavelength_unit": "nanometer",
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"excitation_power": "10",
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"excitation_power_unit": "milliwatt"
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}
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],
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"ephys_modules": [],
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"stick_microscopes": [],
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"manipulator_modules": [],
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"detectors": [],
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"fiber_connections": [],
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"fiber_modules": [],
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"ophys_fovs": [
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{
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"index": 0,
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"imaging_depth": 190,
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"imaging_depth_unit": "micrometer",
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"targeted_structure": "VISp",
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_ap": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_height": 512,
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"fov_size_unit": "micrometer",
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"magnification": "10x",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": 1,
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"power": "5",
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"power_unit": "percent",
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"scanfield_z": 230,
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"scanfield_z_unit": "micrometer",
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"scanimage_roi_index": 0,
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"notes": null
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},
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{
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"index": 1,
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"imaging_depth": 232,
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"imaging_depth_unit": "micrometer",
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"targeted_structure": "VISp",
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_ap": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_size_unit": "micrometer",
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"magnification": "10x",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": 0,
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"power": "42",
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"power_unit": "percent",
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"scanfield_z": 257,
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"scanfield_z_unit": "micrometer",
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"scanimage_roi_index": 0,
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"notes": null
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},
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{
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"index": 2,
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"imaging_depth": 136,
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"imaging_depth_unit": "micrometer",
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"targeted_structure": "VISp",
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_ap": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_height": 512,
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"fov_size_unit": "micrometer",
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"magnification": "10x",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": 3,
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"power": "28",
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"power_unit": "percent",
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"scanfield_z": 176,
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"scanfield_z_unit": "micrometer",
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"scanimage_roi_index": 0,
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"notes": null
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},
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{
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"index": 3,
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"imaging_depth": 282,
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"imaging_depth_unit": "micrometer",
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"targeted_structure": "VISp",
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_height": 512,
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"fov_size_unit": "micrometer",
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"magnification": "10x",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": 2,
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"power": "28",
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"power_unit": "percent",
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"scanfield_z": 307,
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"scanfield_z_unit": "micrometer",
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"scanimage_roi_index": 0,
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"notes": null
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},
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{
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"index": 4,
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"imaging_depth": 72,
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"imaging_depth_unit": "micrometer",
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"targeted_structure": "VISp",
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_ap": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_size_unit": "micrometer",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": 5,
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"power": "12",
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"power_unit": "percent",
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"scanfield_z_unit": "micrometer",
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"notes": null
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},
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{
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"index": 5,
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_size_unit": "micrometer",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"power": "12",
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"power_unit": "percent",
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"scanfield_z_unit": "micrometer",
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"notes": null
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},
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{
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"index": 6,
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"imaging_depth": 30,
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"imaging_depth_unit": "micrometer",
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"targeted_structure": "VISp",
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_ap": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_height": 512,
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"fov_size_unit": "micrometer",
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"magnification": "10x",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": 7,
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"power": "5",
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"power_unit": "percent",
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"scanfield_z": 70,
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"scanfield_z_unit": "micrometer",
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"scanimage_roi_index": 0,
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"notes": null
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},
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{
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"index": 7,
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"imaging_depth": 364,
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"imaging_depth_unit": "micrometer",
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"targeted_structure": "VISp",
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"fov_coordinate_ml": "1.5",
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"fov_coordinate_ap": "1.5",
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"fov_coordinate_unit": "micrometer",
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"fov_reference": "Bregma",
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"fov_width": 512,
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"fov_height": 512,
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"fov_size_unit": "micrometer",
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"magnification": "10x",
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"fov_scale_factor": "0.78",
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"fov_scale_factor_unit": "um/pixel",
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"frame_rate": "9.48",
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"frame_rate_unit": "hertz",
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"coupled_fov_index": 6,
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"power": "5",
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"power_unit": "percent",
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"scanfield_z": 389,
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"scanfield_z_unit": "micrometer",
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"scanimage_roi_index": 0,
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"notes": null
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}
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],
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"slap_fovs": null,
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"stack_parameters": null,
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"stimulus_device_names": [],
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"mouse_platform_name": "disc",
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"active_mouse_platform": true,
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"stream_modalities": [
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{
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"name": "Planar optical physiology",
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"abbreviation": "ophys"
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},
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{
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"name": "Behavior videos",
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"abbreviation": "behavior-videos"
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},
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{
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"name": "Confocal microscopy",
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"abbreviation": "confocal"
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}
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],
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"notes": null
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}
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],
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"stimulus_epochs": [],
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"reward_delivery": null,
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"reward_consumed_total": null,
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"reward_consumed_unit": "microliter",
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"notes": null
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}

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