fix: remove nan subject first

Author: hanhou

code/util/reformat.py

@@ -93,6 +93,7 @@ def formatting_metadata_df(df, source_prefix="docDB"):
     )
 
     # Remove invalid subject_id
+    df = df[df.index.get_level_values("subject_id").notna()]  # Remove nan subject_id first
     df = df[(df.index.get_level_values("subject_id").astype(int) > 300000) 
             & (df.index.get_level_values("subject_id").astype(int) < 999999)]
 

environment/environment.yml

@@ -0,0 +1,8 @@
+environment_version: 1
+credentials:
+- type: aws
+  id: TVzMZb03z4zt7S6U
+  description: AWS Assumable Role - aind-codeocean-user
+  access_key_id: AWS_ACCESS_KEY_ID
+  secret_access_key: AWS_SECRET_ACCESS_KEY
+  region: AWS_DEFAULT_REGION

environment/postInstall

@@ -1,4 +1,4 @@
-#!/usr/bin/env bash
+   #!/usr/bin/env bash
 set -e
 
 # check if code-server is installed, and then install extensions into specified directory

src/aind-analysis-arch-result-access

@@ -1 +1 @@
-Subproject commit 8c82fd513435a754e2c71151e6e11f7fb6be4ee4
+Subproject commit ae4d61a2bf0e82b94086e69ccb8ccb0ff697b14e

src/aind-dynamic-foraging-population-analysis

@@ -0,0 +1 @@
+Subproject commit 5079424709db1cb799ad4caf1c688a045cbf5cc1