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lines changed Original file line number Diff line number Diff line change @@ -74,26 +74,21 @@ from segmentation_skeleton_metrics.skeleton_metric import SkeletonMetric
7474from segmentation_skeleton_metrics.utils.img_util import TiffReader
7575
7676
77- def evaluate ():
78- segmentation = TiffReader(segmentation_path)
79- skeleton_metric = SkeletonMetric(
80- groundtruth_pointer,
81- segmentation,
82- fragments_pointer = fragments_pointer,
83- output_dir = output_dir,
84- )
85- skeleton_metric.run()
86-
87-
88- if __name__ == " __main__" :
89- # Initializations
90- output_dir = " ./"
91- segmentation_path = " ./pred_labels.tif"
92- fragments_pointer = " ./pred_swcs.zip"
93- groundtruth_pointer = " ./target_swcs.zip"
94-
95- # Run
96- evaluate()
77+ # Initializations
78+ output_dir = " ./"
79+ segmentation_path = " ./pred_labels.tif"
80+ fragments_pointer = " ./pred_swcs.zip"
81+ groundtruth_pointer = " ./target_swcs.zip"
82+
83+ # Run
84+ segmentation = TiffReader(segmentation_path)
85+ skeleton_metric = SkeletonMetric(
86+ groundtruth_pointer,
87+ segmentation,
88+ fragments_pointer = fragments_pointer,
89+ output_dir = output_dir,
90+ )
91+ skeleton_metric.run()
9792```
9893
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