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README.md

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@@ -26,14 +26,14 @@ The pipeline for computing skeleton metrics consists of three main steps:
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### Step 1: Label Graphs
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We start with a set of ground truth graphs stored as individual SWC files, where the "xyz" attribute represents voxel coordinates in an image. Each ground truth graph is loaded and represented as a NetworkX graph with the voxel coordinates as a node-level attribute. The first step is to label the nodes of each graph with the corresponding segment IDs from the predicted segmentation.
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We start with a set of ground truth graphs stored as individual SWC files, where the "xyz" attribute represents voxel coordinates in an image. Each ground truth graph is loaded and represented as a NetworkX graph with the voxel coordinates as a node-level attribute. The first step is to label the nodes of each graph with the corresponding segment IDs from the segmentation.
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Note: Misalignments between the ground truth graphs and prediction segmentation are detected and corrected.
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<p align="center">
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<img src="imgs/misalignment-example.png" width="400" alt="misalignment-example">
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<br>
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<b>Figure:</b> Node 3 is an example of a misalignment between a ground truth graph and predicted segmentation.
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<b>Figure:</b> Node 3 is an example of a misalignment between a ground truth graph and segmentation.
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</p>
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