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1 parent 43b87aa commit 5fb5031Copy full SHA for 5fb5031
README.md
@@ -74,10 +74,10 @@ from segmentation_skeleton_metrics.utils.img_util import TiffReader
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def evaluate():
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# Initializations
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- pred_labels = TiffReader(pred_labels_path)
+ segmentation = TiffReader(segmentation_path)
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skeleton_metric = SkeletonMetric(
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groundtruth_pointer,
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- pred_labels,
+ segmentation,
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fragments_pointer=fragments_pointer,
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output_dir=output_dir,
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)
@@ -100,7 +100,7 @@ def evaluate():
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if __name__ == "__main__":
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output_dir = "./"
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- pred_labels_path = "./pred_labels.tif"
+ segmentation_path = "./pred_labels.tif"
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fragments_pointer = "./pred_swcs.zip"
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groundtruth_pointer = "./target_swcs.zip"
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