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@@ -19,12 +19,13 @@ The pipeline for computing skeleton metrics consists of three main steps:
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<p>
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<img src="imgs/pipeline.png" width="800" alt="pipeline">
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<b> Figure: </b>Visualization of pipeline to compute skeleton metrics, see Method section for description of each step.
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<b> Figure: </b>Visualization of skeleton metric computation pipeline, see Method section for description of each step.
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</p>
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## Method
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### Step 1: Label Graphs
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We begin with a set of ground truth skeletons stored as individual SWC files, where the "xyz" coordinates correspond to voxels in an image. Each ground truth skeleton is loaded and represented as a NetworkX graph with the voxel coordinates as a node-level attribute. The evaluation is performed by first labeling the nodes of each graph with the corresponding segment IDs from the predicted segmentation.
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