Most of the code in this repository is derived from the official DNAnexus UKB_RAP GWAS pipeline. For full details, please refer to the original repository: 👉 https://github.com/dnanexus/UKB_RAP/tree/main/GWAS
I have added explanatary comments, some codes(for better comprehension) and provided an example run to make the workflow easier to follow. The order of scripts: GWAS_regenie.ipynb ➡️ PartB ➡️ PartC ➡️ PartD ➡️ PartE ➡️ PartF ➡️ PartG. For the detailed illustration of codes, you can read the slides.
All slides in this presentation were created by Antonella Guo.
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