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Anushree0408/README.md

Anushree Joshi

Computational Biology graduate student working on microbiome (16S, PICRUSt2) and host transcriptomics with applied machine learning for biomarker discovery.

Core skills

  • Microbiome bioinformatics: QIIME2, taxonomy/feature-table workflows, diversity analysis
  • Functional profiling: PICRUSt2 (pathways, contribution analysis, visualization)
  • RNA-seq: QC → alignment/quantification → downstream interpretation
  • Machine learning: Random Forest, XGBoost, SVM, Logistic Regression, nested CV, ROC/PR, SHAP
  • Programming & tools: Python, R, Bash, Linux, Conda, Nextflow

Interests

Host–microbiome interactions • Pediatric gut microbiome • Reproducible bioinformatics pipelines

📍 Daegu, South Korea
📧 sjoshi218@gmail.com
🔗 LinkedIn: https://www.linkedin.com/in/anushree-joshi-722279293
🔗 GitHub: https://github.com/Anushree0408

Popular repositories Loading

  1. Anushree0408 Anushree0408 Public

    Config files for my GitHub profile.

  2. NAFLD_SANKEY_PiCRUST2 NAFLD_SANKEY_PiCRUST2 Public

    "Sankey plots linking microbial genera to predicted pathways in NAFLD"

  3. infant-gut-microbiome-transition-ml infant-gut-microbiome-transition-ml Public

    Amplicon-based infant gut microbiome transition across 0–48 months using nested CV + ML models