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GToTree v1.8.15

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@AstrobioMike AstrobioMike released this 27 Jun 14:25
· 4 commits to master since this release
v1.8.15
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Learn about vigilant mode.

Added

  • added a flag to gtt-get-accessions-from-GTDB (--use-ecogenomics) to allow specifing to download from data.gtdb.ecogenomic.org/releases instead of the default data.ace.uq.edu.au/public/gtdb/data/releases thanks to the suggestion from @Stian-2rz (#107)
  • a partitions file in nexus format (<outdir>/run_files/Partitions.nex) is produced in addition to the regular text-formatted one (<outdir>/run_files/Partitions.txt), because for some iqtree model settings the txt format has leads to a bug – also thanks to @Stian-2rz! (#108)

Changed

  • currently skipping certificate checking on GTDB downloads (prompted from #107)
    • this impacts gtt-get-accessions-from-GTDB and the internally used gtt-check-or-setup-GTDB-files

Contributors

Stian-2rz
Assets 2
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