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GToTree v1.8.7

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@AstrobioMike AstrobioMike released this 30 Sep 01:07
· 41 commits to master since this release
v1.8.7
39ce5f1

  • improvements to the "Universal" Hug et al. gene set thanks so much to @molly-kholodova digging in and reaching out!

    • PF00181 ("Ribosomal_L2") was changed to PF03947 ("Ribosomal_L2_C")
      • the C-terminal (which PF03947 covers) is better conserved
    • PF00827 ("Ribosomal_L15") was changed to PF00828 ("Ribosomal_L27A")
      • PF00827 was archaea/euk only, PF00828 holds the bac/arc L15 also
    • PF17135 ("Ribosomal_L18") was changed to PF00861 ("Ribosomal_L18p")
      • the PF00861 model is better distributed

  • gtt-gen-SCG-HMMs now reports which version of PFAM was used (prints it out to the terminal and writes it to a file)

Full Changelog: v1.8.6...v1.8.7

Contributors

molly-kholodova
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