v1.13.5

Changed

• bit-count-bases-per-seq has been removed with its function combined into bit-count-bases
  • if input fasta has one sequence, it prints the length to the terminal; if it has 2 or more, it will print out summary stats; in either of the two prior cases, if an output file is specified, the program will additionally write lengths of all sequences to that specified file
  • modularized, test added
• modularized and added unit tests for bit-lineage-to-tsv
• bit-mutate-seqs
  • --seed-for-randomization long-parameter shortened to just --seed
  • modularized and test added

Fixed

• bit-assemble now properly filters spades-assembled contigs based on user-specific min-contig length