atlantistools 0.5.0

New features

• New get function to extract information from functionalGroups.csv
  • get_cohorts_acronyms. Extract Codes of species with specified number of cohorts
  • get_fished_acronyms. Extract Codes of species for which IsFished = 1
  • get_turnedon_acronyms. Extract Codes of species for which IsTurneOn = 1
• load_mort Reads in output from Mort.txt file
• load_spec_mort. Reads in mortality output from SpecificMort.txt

Minor improvements

• load_spec_pred_mortrenamed from load_spec_mort. Reads in mortality output from SpecificPredMort.txt
• preprocess_txt. Added argument removeZeros = T. User can select not to remove zeros from output
• plot_line. Added argument, ylim to specify min and max values

Bug fixes

• load-init Variables that have data at box level only (no layer data) can now be read from the nc file.