cd LOCUS
apt-get install python3-venv
python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
Step 04: Download the data form here. Unzip the downladed file into the <data>
folder.
mkdir data
cd data
unzip <downloaded_file>.zip
Note: A small subset of data is provided with the repository to test the pipeline. To train the whole model with the full dataset, please follow the link given above.
python feature.py --full_rank
pyhton train.py
- Update
feature_params
fromparameters/parameters.py
. For example, to create$\tilde{F}$ with$75\%$ of doppingfeature_params
should be like this:feature_params = { "is_doping": True, "doping_pct": .75, "no_dopped_channel": 3 }
- Run the following:
python feature.py
python -W ignore train_locus.py