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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 257 35

  2. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 118 21

  3. flexynesis flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    Python 103 32

  4. genomation genomation Public

    R package for genomic feature analysis and visualization

    HTML 79 24

  5. compgen2021 compgen2021 Public

    R 77 24

  6. PocketVina PocketVina Public

    GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementation of PocketVina

    C++ 71 10

Repositories

Showing 10 of 126 repositories
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 103 32 10 0 Updated Mar 31, 2026
  • dummy-spatialdata Public

    A package for creating dummy spatialdata objects for testing purposes.

    BIMSBbioinfo/dummy-spatialdata’s past year of commit activity
    Python 0 0 0 0 Updated Mar 31, 2026
  • ImageArray Public
    BIMSBbioinfo/ImageArray’s past year of commit activity
    R 5 2 3 0 Updated Mar 27, 2026
  • pycacher Public
    BIMSBbioinfo/pycacher’s past year of commit activity
    Python 0 0 0 0 Updated Mar 23, 2026
  • RSimpleITK Public

    R Installer for SimpleITK with Elastix

    BIMSBbioinfo/RSimpleITK’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 23, 2026
  • cacheR Public
    BIMSBbioinfo/cacheR’s past year of commit activity
    R 1 0 1 0 Updated Mar 20, 2026
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 118 21 1 1 Updated Mar 13, 2026
  • SimpleITKRInstaller Public Forked from SimpleITK/SimpleITKRInstaller

    Remotes based SimpleITK R installer.

    BIMSBbioinfo/SimpleITKRInstaller’s past year of commit activity
    R 0 12 0 0 Updated Mar 12, 2026
  • bimsbbioinfo.r-universe.dev Public

    R-universe BIMSBbioinfo

    BIMSBbioinfo/bimsbbioinfo.r-universe.dev’s past year of commit activity
    0 0 0 0 Updated Mar 11, 2026
  • BIMSBbioinfo/Course_SystemsBiology’s past year of commit activity
    JavaScript 0 0 0 0 Updated Mar 6, 2026

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